Strain Fitness in Variovorax sp. SCN45 around GFF6494

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6492 and GFF6493 are separated by 519 nucleotidesGFF6493 and GFF6494 are separated by 83 nucleotidesGFF6494 and GFF6495 are separated by 93 nucleotidesGFF6495 and GFF6496 are separated by 2 nucleotides GFF6492 - no description, at 69,338 to 69,676 GFF6492 GFF6493 - Ribosomal-protein-S5p-alanine acetyltransferase, at 70,196 to 70,549 GFF6493 GFF6494 - protein of unknown function DUF1232, at 70,633 to 71,025 GFF6494 GFF6495 - rifampin ADP-ribosyl transferase, at 71,119 to 71,514 GFF6495 GFF6496 - Tannase and feruloyl esterase, at 71,517 to 73,235 GFF6496 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.825 kb on - strandat 69.825 kb on - strandat 69.927 kb on + strandat 69.927 kb on + strandat 69.928 kb on - strandat 69.928 kb on - strandat 70.062 kb on - strandat 70.062 kb on - strandat 70.062 kb on - strandat 70.178 kb on + strandat 70.179 kb on - strandat 70.179 kb on - strandat 70.271 kb on - strand, within GFF6493at 70.271 kb on - strand, within GFF6493at 70.271 kb on - strand, within GFF6493at 70.299 kb on - strand, within GFF6493at 70.307 kb on + strand, within GFF6493at 70.310 kb on + strand, within GFF6493at 70.310 kb on + strand, within GFF6493at 70.310 kb on + strand, within GFF6493at 70.310 kb on + strand, within GFF6493at 70.310 kb on + strand, within GFF6493at 70.311 kb on - strand, within GFF6493at 70.311 kb on - strand, within GFF6493at 70.478 kb on + strand, within GFF6493at 70.479 kb on - strand, within GFF6493at 70.479 kb on - strand, within GFF6493at 70.479 kb on - strand, within GFF6493at 70.479 kb on - strand, within GFF6493at 70.479 kb on - strand, within GFF6493at 70.490 kb on + strand, within GFF6493at 70.490 kb on + strand, within GFF6493at 70.491 kb on - strand, within GFF6493at 70.491 kb on - strand, within GFF6493at 70.491 kb on - strand, within GFF6493at 70.547 kb on + strandat 70.548 kb on - strandat 70.548 kb on - strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.605 kb on + strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.606 kb on - strandat 70.719 kb on + strand, within GFF6494at 70.719 kb on + strand, within GFF6494at 70.719 kb on + strand, within GFF6494at 70.720 kb on - strand, within GFF6494at 70.729 kb on + strand, within GFF6494at 70.762 kb on + strand, within GFF6494at 70.762 kb on - strand, within GFF6494at 70.763 kb on - strand, within GFF6494at 70.813 kb on + strand, within GFF6494at 70.814 kb on - strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on + strand, within GFF6494at 70.829 kb on - strand, within GFF6494at 70.830 kb on - strand, within GFF6494at 70.830 kb on - strand, within GFF6494at 70.830 kb on - strand, within GFF6494at 71.143 kb on + strandat 71.143 kb on + strandat 71.143 kb on + strandat 71.143 kb on + strandat 71.143 kb on + strandat 71.143 kb on + strandat 71.144 kb on - strandat 71.144 kb on - strandat 71.144 kb on - strandat 71.209 kb on + strand, within GFF6495at 71.209 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.239 kb on + strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.240 kb on - strand, within GFF6495at 71.311 kb on + strand, within GFF6495at 71.311 kb on + strand, within GFF6495at 71.311 kb on + strand, within GFF6495at 71.311 kb on + strand, within GFF6495at 71.311 kb on + strand, within GFF6495at 71.312 kb on - strand, within GFF6495at 71.312 kb on - strand, within GFF6495at 71.326 kb on - strand, within GFF6495at 71.392 kb on + strand, within GFF6495at 71.392 kb on + strand, within GFF6495at 71.393 kb on - strand, within GFF6495at 71.458 kb on + strand, within GFF6495at 71.458 kb on + strand, within GFF6495at 71.458 kb on + strand, within GFF6495at 71.458 kb on + strand, within GFF6495at 71.458 kb on + strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.459 kb on - strand, within GFF6495at 71.542 kb on + strandat 71.543 kb on - strandat 71.575 kb on + strandat 71.575 kb on + strandat 71.575 kb on + strandat 71.575 kb on + strandat 71.575 kb on + strandat 71.575 kb on + strandat 71.576 kb on - strandat 71.585 kb on - strandat 71.585 kb on - strandat 71.763 kb on - strand, within GFF6496at 71.791 kb on + strand, within GFF6496at 71.791 kb on + strand, within GFF6496at 71.791 kb on + strand, within GFF6496at 71.791 kb on + strand, within GFF6496at 71.792 kb on - strand, within GFF6496at 71.792 kb on - strand, within GFF6496at 71.848 kb on + strand, within GFF6496at 71.848 kb on + strand, within GFF6496at 71.849 kb on - strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496at 71.851 kb on + strand, within GFF6496

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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69,825 - -1.1
69,825 - +1.5
69,927 + -1.0
69,927 + +0.7
69,928 - +1.9
69,928 - +0.5
70,062 - -1.0
70,062 - -1.9
70,062 - -0.3
70,178 + +1.5
70,179 - -0.5
70,179 - +0.8
70,271 - GFF6493 0.21 +1.0
70,271 - GFF6493 0.21 -1.3
70,271 - GFF6493 0.21 -0.1
70,299 - GFF6493 0.29 -1.7
70,307 + GFF6493 0.31 -0.6
70,310 + GFF6493 0.32 -0.3
70,310 + GFF6493 0.32 -0.5
70,310 + GFF6493 0.32 -2.6
70,310 + GFF6493 0.32 -0.0
70,310 + GFF6493 0.32 -1.3
70,311 - GFF6493 0.32 -1.3
70,311 - GFF6493 0.32 -0.4
70,478 + GFF6493 0.80 +0.6
70,479 - GFF6493 0.80 -0.2
70,479 - GFF6493 0.80 -0.4
70,479 - GFF6493 0.80 -1.0
70,479 - GFF6493 0.80 -0.1
70,479 - GFF6493 0.80 +0.2
70,490 + GFF6493 0.83 +0.3
70,490 + GFF6493 0.83 -0.8
70,491 - GFF6493 0.83 +0.3
70,491 - GFF6493 0.83 -0.2
70,491 - GFF6493 0.83 -0.3
70,547 + +0.3
70,548 - +0.1
70,548 - +0.8
70,605 + -2.3
70,605 + -0.2
70,605 + +0.5
70,605 + +1.5
70,605 + +0.1
70,605 + +0.2
70,605 + -0.2
70,605 + +1.1
70,606 - -1.1
70,606 - -0.5
70,606 - +2.1
70,606 - +0.9
70,606 - -0.2
70,606 - -0.2
70,606 - -0.2
70,606 - -0.4
70,606 - +0.2
70,606 - -2.0
70,606 - -0.5
70,719 + GFF6494 0.22 +0.3
70,719 + GFF6494 0.22 +0.5
70,719 + GFF6494 0.22 -0.2
70,720 - GFF6494 0.22 -0.3
70,729 + GFF6494 0.24 +1.1
70,762 + GFF6494 0.33 +1.0
70,762 - GFF6494 0.33 +0.2
70,763 - GFF6494 0.33 +1.1
70,813 + GFF6494 0.46 -0.3
70,814 - GFF6494 0.46 +0.5
70,829 + GFF6494 0.50 -0.8
70,829 + GFF6494 0.50 +0.0
70,829 + GFF6494 0.50 +0.4
70,829 + GFF6494 0.50 -1.3
70,829 + GFF6494 0.50 -0.5
70,829 + GFF6494 0.50 -0.2
70,829 - GFF6494 0.50 -0.7
70,830 - GFF6494 0.50 +0.7
70,830 - GFF6494 0.50 +1.0
70,830 - GFF6494 0.50 +0.6
71,143 + +0.2
71,143 + +0.5
71,143 + -0.5
71,143 + -0.7
71,143 + +0.4
71,143 + -0.2
71,144 - +0.1
71,144 - +0.5
71,144 - +0.2
71,209 + GFF6495 0.23 -0.8
71,209 + GFF6495 0.23 +0.5
71,239 + GFF6495 0.30 +0.5
71,239 + GFF6495 0.30 -0.5
71,239 + GFF6495 0.30 +1.5
71,239 + GFF6495 0.30 +0.5
71,239 + GFF6495 0.30 -0.9
71,239 + GFF6495 0.30 -0.6
71,239 + GFF6495 0.30 -0.1
71,240 - GFF6495 0.31 +2.0
71,240 - GFF6495 0.31 -2.6
71,240 - GFF6495 0.31 -1.6
71,240 - GFF6495 0.31 +0.2
71,240 - GFF6495 0.31 -0.7
71,240 - GFF6495 0.31 +0.1
71,240 - GFF6495 0.31 +0.7
71,311 + GFF6495 0.48 +0.2
71,311 + GFF6495 0.48 +0.6
71,311 + GFF6495 0.48 -1.0
71,311 + GFF6495 0.48 +0.9
71,311 + GFF6495 0.48 -0.1
71,312 - GFF6495 0.49 +0.3
71,312 - GFF6495 0.49 +0.4
71,326 - GFF6495 0.52 -0.1
71,392 + GFF6495 0.69 +0.7
71,392 + GFF6495 0.69 +0.1
71,393 - GFF6495 0.69 -0.6
71,458 + GFF6495 0.86 -0.6
71,458 + GFF6495 0.86 -0.6
71,458 + GFF6495 0.86 +0.7
71,458 + GFF6495 0.86 -0.3
71,458 + GFF6495 0.86 +1.5
71,459 - GFF6495 0.86 +0.3
71,459 - GFF6495 0.86 -1.5
71,459 - GFF6495 0.86 -0.8
71,459 - GFF6495 0.86 -0.7
71,459 - GFF6495 0.86 +0.7
71,459 - GFF6495 0.86 -2.8
71,542 + -0.2
71,543 - +0.0
71,575 + -0.1
71,575 + -0.3
71,575 + +0.3
71,575 + -1.2
71,575 + -0.7
71,575 + -0.4
71,576 - +0.0
71,585 - +0.2
71,585 - +0.5
71,763 - GFF6496 0.14 +0.3
71,791 + GFF6496 0.16 -0.8
71,791 + GFF6496 0.16 +0.4
71,791 + GFF6496 0.16 -2.3
71,791 + GFF6496 0.16 +0.8
71,792 - GFF6496 0.16 +0.7
71,792 - GFF6496 0.16 -1.0
71,848 + GFF6496 0.19 +0.4
71,848 + GFF6496 0.19 -0.6
71,849 - GFF6496 0.19 -0.1
71,851 + GFF6496 0.19 +0.3
71,851 + GFF6496 0.19 -0.4
71,851 + GFF6496 0.19 +0.3
71,851 + GFF6496 0.19 +0.2
71,851 + GFF6496 0.19 +0.3
71,851 + GFF6496 0.19 +0.2
71,851 + GFF6496 0.19 +1.4
71,851 + GFF6496 0.19 +1.5

Or see this region's nucleotide sequence