Strain Fitness in Variovorax sp. SCN45 around GFF6490

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6488 and GFF6489 are separated by 497 nucleotidesGFF6489 and GFF6490 overlap by 4 nucleotidesGFF6490 and GFF6491 are separated by 80 nucleotidesGFF6491 and GFF6492 are separated by 22 nucleotides GFF6488 - no description, at 66,796 to 66,915 GFF6488 GFF6489 - no description, at 67,413 to 67,856 GFF6489 GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545 GFF6490 GFF6491 - SAM-dependent methyltransferase, at 68,626 to 69,315 GFF6491 GFF6492 - no description, at 69,338 to 69,676 GFF6492 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.870 kb on - strand, within GFF6488at 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.973 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.128 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.204 kb on - strandat 67.204 kb on - strandat 67.447 kb on + strandat 67.448 kb on - strandat 67.448 kb on - strandat 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.472 kb on - strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.741 kb on + strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.764 kb on - strand, within GFF6489at 67.959 kb on + strand, within GFF6490at 67.959 kb on + strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.960 kb on - strand, within GFF6490at 67.983 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.091 kb on + strand, within GFF6490at 68.092 kb on - strand, within GFF6490at 68.092 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.143 kb on - strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.226 kb on + strand, within GFF6490at 68.227 kb on - strand, within GFF6490at 68.227 kb on - strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.289 kb on + strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.290 kb on - strand, within GFF6490at 68.474 kb on + strand, within GFF6490at 68.666 kb on + strandat 68.667 kb on - strandat 68.813 kb on + strand, within GFF6491at 69.005 kb on + strand, within GFF6491at 69.005 kb on + strand, within GFF6491at 69.005 kb on + strand, within GFF6491at 69.005 kb on + strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491at 69.006 kb on - strand, within GFF6491

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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66,856 + GFF6488 0.50 -0.8
66,856 + GFF6488 0.50 -1.0
66,856 + GFF6488 0.50 +0.2
66,857 - GFF6488 0.51 -0.3
66,857 - GFF6488 0.51 -0.5
66,870 - GFF6488 0.62 -0.7
66,915 + -0.6
66,915 + -1.1
66,915 + +0.1
66,915 + +0.1
66,916 - -0.7
66,916 - -0.6
66,916 - +0.2
66,916 - -0.7
66,973 + -0.8
67,113 + +0.7
67,113 + -0.3
67,113 + -2.3
67,113 + -1.3
67,113 + -0.5
67,113 + +2.2
67,113 + -1.3
67,113 - -0.7
67,114 - +0.3
67,114 - +0.1
67,114 - -0.6
67,114 - -0.4
67,114 - -0.2
67,128 + -0.6
67,155 + -0.5
67,155 + +0.4
67,155 + -0.8
67,155 + -1.3
67,155 + +0.2
67,156 - -0.8
67,156 - +0.0
67,156 - +0.3
67,156 - -0.6
67,156 - -0.1
67,156 - -1.1
67,203 + -0.6
67,203 + +1.4
67,203 + -0.7
67,204 - -0.8
67,204 - +0.2
67,447 + +0.6
67,448 - +0.6
67,448 - +1.2
67,471 + GFF6489 0.13 -0.7
67,471 + GFF6489 0.13 +1.3
67,471 + GFF6489 0.13 -1.1
67,471 + GFF6489 0.13 -0.7
67,471 + GFF6489 0.13 +0.2
67,472 - GFF6489 0.13 +1.0
67,531 + GFF6489 0.27 -0.1
67,531 + GFF6489 0.27 +0.0
67,531 + GFF6489 0.27 -0.2
67,531 + GFF6489 0.27 -3.0
67,531 + GFF6489 0.27 +0.4
67,531 + GFF6489 0.27 -0.2
67,531 + GFF6489 0.27 +0.1
67,531 + GFF6489 0.27 -0.7
67,532 - GFF6489 0.27 +0.3
67,532 - GFF6489 0.27 -1.4
67,532 - GFF6489 0.27 -1.5
67,532 - GFF6489 0.27 -0.6
67,532 - GFF6489 0.27 +0.1
67,532 - GFF6489 0.27 -0.4
67,532 - GFF6489 0.27 +0.5
67,532 - GFF6489 0.27 -1.8
67,532 - GFF6489 0.27 +1.7
67,532 - GFF6489 0.27 +0.3
67,741 + GFF6489 0.74 -0.7
67,742 - GFF6489 0.74 +0.4
67,742 - GFF6489 0.74 +0.8
67,764 - GFF6489 0.79 +0.7
67,959 + GFF6490 0.15 -0.3
67,959 + GFF6490 0.15 -1.2
67,960 - GFF6490 0.15 -1.2
67,960 - GFF6490 0.15 -1.6
67,960 - GFF6490 0.15 +0.1
67,983 + GFF6490 0.19 +1.0
68,091 + GFF6490 0.34 -0.8
68,091 + GFF6490 0.34 -0.8
68,091 + GFF6490 0.34 +0.0
68,091 + GFF6490 0.34 -1.6
68,091 + GFF6490 0.34 +0.2
68,091 + GFF6490 0.34 -0.6
68,091 + GFF6490 0.34 -0.2
68,092 - GFF6490 0.34 +2.5
68,092 - GFF6490 0.34 -1.1
68,143 - GFF6490 0.42 -0.6
68,143 - GFF6490 0.42 +0.0
68,143 - GFF6490 0.42 -0.7
68,143 - GFF6490 0.42 -0.2
68,226 + GFF6490 0.54 +2.5
68,226 + GFF6490 0.54 -0.2
68,226 + GFF6490 0.54 -0.3
68,226 + GFF6490 0.54 +1.1
68,227 - GFF6490 0.54 -2.2
68,227 - GFF6490 0.54 -0.3
68,289 + GFF6490 0.63 +1.5
68,289 + GFF6490 0.63 -0.8
68,289 + GFF6490 0.63 -1.3
68,289 + GFF6490 0.63 -1.4
68,290 - GFF6490 0.63 -0.5
68,290 - GFF6490 0.63 -0.3
68,290 - GFF6490 0.63 -0.6
68,290 - GFF6490 0.63 -0.1
68,290 - GFF6490 0.63 +2.5
68,474 + GFF6490 0.90 -2.5
68,666 + -0.8
68,667 - -0.1
68,813 + GFF6491 0.27 +0.5
69,005 + GFF6491 0.55 +0.0
69,005 + GFF6491 0.55 -0.8
69,005 + GFF6491 0.55 +0.1
69,005 + GFF6491 0.55 -0.2
69,006 - GFF6491 0.55 -0.3
69,006 - GFF6491 0.55 -0.3
69,006 - GFF6491 0.55 -0.1
69,006 - GFF6491 0.55 -1.8
69,006 - GFF6491 0.55 +0.6
69,006 - GFF6491 0.55 -0.5
69,006 - GFF6491 0.55 -0.5

Or see this region's nucleotide sequence