Strain Fitness in Variovorax sp. SCN45 around GFF6482

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6481 and GFF6482 are separated by 49 nucleotidesGFF6482 and GFF6483 overlap by 26 nucleotidesGFF6483 and GFF6484 are separated by 26 nucleotides GFF6481 - Bll1370 protein, at 60,118 to 61,230 GFF6481 GFF6482 - Transcriptional regulator, AcrR family, at 61,280 to 61,903 GFF6482 GFF6483 - Serine esterase, at 61,878 to 62,555 GFF6483 GFF6484 - putative oxidoreductase, nitronate monooxygenase family, at 62,582 to 63,634 GFF6484 Position (kb) 61 62Strain fitness (log2 ratio) -2 -1 0 1at 60.350 kb on + strand, within GFF6481at 60.350 kb on + strand, within GFF6481at 60.351 kb on - strand, within GFF6481at 60.351 kb on - strand, within GFF6481at 60.422 kb on + strand, within GFF6481at 60.422 kb on + strand, within GFF6481at 60.422 kb on + strand, within GFF6481at 60.423 kb on - strand, within GFF6481at 60.423 kb on - strand, within GFF6481at 60.423 kb on - strand, within GFF6481at 60.423 kb on - strand, within GFF6481at 60.431 kb on + strand, within GFF6481at 60.432 kb on - strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.500 kb on + strand, within GFF6481at 60.501 kb on - strand, within GFF6481at 60.501 kb on - strand, within GFF6481at 60.501 kb on - strand, within GFF6481at 60.501 kb on - strand, within GFF6481at 60.539 kb on + strand, within GFF6481at 60.539 kb on + strand, within GFF6481at 60.540 kb on - strand, within GFF6481at 60.540 kb on - strand, within GFF6481at 60.557 kb on + strand, within GFF6481at 60.557 kb on + strand, within GFF6481at 60.557 kb on + strand, within GFF6481at 60.558 kb on - strand, within GFF6481at 60.558 kb on - strand, within GFF6481at 60.558 kb on - strand, within GFF6481at 60.773 kb on + strand, within GFF6481at 60.794 kb on + strand, within GFF6481at 60.794 kb on + strand, within GFF6481at 60.794 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.821 kb on + strand, within GFF6481at 60.822 kb on - strand, within GFF6481at 60.822 kb on - strand, within GFF6481at 60.822 kb on - strand, within GFF6481at 60.869 kb on + strand, within GFF6481at 60.869 kb on + strand, within GFF6481at 60.869 kb on + strand, within GFF6481at 60.870 kb on - strand, within GFF6481at 60.870 kb on - strand, within GFF6481at 60.870 kb on - strand, within GFF6481at 60.930 kb on - strand, within GFF6481at 60.936 kb on - strand, within GFF6481at 60.936 kb on - strand, within GFF6481at 60.936 kb on - strand, within GFF6481at 60.936 kb on - strand, within GFF6481at 61.046 kb on + strand, within GFF6481at 61.047 kb on - strand, within GFF6481at 61.047 kb on - strand, within GFF6481at 61.076 kb on + strand, within GFF6481at 61.076 kb on + strand, within GFF6481at 61.077 kb on - strand, within GFF6481at 61.077 kb on - strand, within GFF6481at 61.210 kb on + strandat 61.211 kb on - strandat 61.241 kb on + strandat 61.241 kb on + strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.242 kb on - strandat 61.355 kb on + strand, within GFF6482at 61.356 kb on - strand, within GFF6482at 61.356 kb on - strand, within GFF6482at 61.451 kb on + strand, within GFF6482at 61.451 kb on + strand, within GFF6482at 61.451 kb on + strand, within GFF6482at 61.451 kb on + strand, within GFF6482at 61.451 kb on + strand, within GFF6482at 61.452 kb on - strand, within GFF6482at 61.452 kb on - strand, within GFF6482at 61.457 kb on + strand, within GFF6482at 61.458 kb on - strand, within GFF6482at 61.458 kb on - strand, within GFF6482at 61.490 kb on + strand, within GFF6482at 61.692 kb on - strand, within GFF6482at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.362 kb on + strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.363 kb on - strand, within GFF6483at 62.383 kb on + strand, within GFF6483at 62.383 kb on + strand, within GFF6483at 62.383 kb on + strand, within GFF6483at 62.383 kb on + strand, within GFF6483at 62.384 kb on - strand, within GFF6483at 62.384 kb on - strand, within GFF6483

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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60,350 + GFF6481 0.21 +1.5
60,350 + GFF6481 0.21 -0.2
60,351 - GFF6481 0.21 -0.4
60,351 - GFF6481 0.21 -0.8
60,422 + GFF6481 0.27 -1.3
60,422 + GFF6481 0.27 -0.1
60,422 + GFF6481 0.27 +1.2
60,423 - GFF6481 0.27 -1.0
60,423 - GFF6481 0.27 +0.3
60,423 - GFF6481 0.27 +0.1
60,423 - GFF6481 0.27 -0.5
60,431 + GFF6481 0.28 +0.8
60,432 - GFF6481 0.28 -0.3
60,500 + GFF6481 0.34 +0.5
60,500 + GFF6481 0.34 -1.5
60,500 + GFF6481 0.34 +0.2
60,500 + GFF6481 0.34 +0.3
60,500 + GFF6481 0.34 +0.5
60,500 + GFF6481 0.34 +0.1
60,500 + GFF6481 0.34 -2.4
60,501 - GFF6481 0.34 -1.1
60,501 - GFF6481 0.34 -0.7
60,501 - GFF6481 0.34 -1.0
60,501 - GFF6481 0.34 -1.8
60,539 + GFF6481 0.38 -0.3
60,539 + GFF6481 0.38 -0.1
60,540 - GFF6481 0.38 +0.4
60,540 - GFF6481 0.38 -0.6
60,557 + GFF6481 0.39 -0.1
60,557 + GFF6481 0.39 -1.4
60,557 + GFF6481 0.39 -0.4
60,558 - GFF6481 0.40 -0.4
60,558 - GFF6481 0.40 -0.4
60,558 - GFF6481 0.40 +0.5
60,773 + GFF6481 0.59 +0.5
60,794 + GFF6481 0.61 +0.4
60,794 + GFF6481 0.61 +0.5
60,794 + GFF6481 0.61 +0.1
60,821 + GFF6481 0.63 -0.4
60,821 + GFF6481 0.63 +0.3
60,821 + GFF6481 0.63 -0.3
60,821 + GFF6481 0.63 -0.1
60,821 + GFF6481 0.63 -0.2
60,821 + GFF6481 0.63 -0.2
60,822 - GFF6481 0.63 -1.7
60,822 - GFF6481 0.63 -0.0
60,822 - GFF6481 0.63 -0.9
60,869 + GFF6481 0.67 -0.2
60,869 + GFF6481 0.67 +0.9
60,869 + GFF6481 0.67 -1.5
60,870 - GFF6481 0.68 -0.1
60,870 - GFF6481 0.68 -0.1
60,870 - GFF6481 0.68 -0.3
60,930 - GFF6481 0.73 -0.2
60,936 - GFF6481 0.73 +1.5
60,936 - GFF6481 0.73 -1.7
60,936 - GFF6481 0.73 -0.4
60,936 - GFF6481 0.73 +1.2
61,046 + GFF6481 0.83 +0.1
61,047 - GFF6481 0.83 +0.8
61,047 - GFF6481 0.83 -0.3
61,076 + GFF6481 0.86 -0.8
61,076 + GFF6481 0.86 +0.3
61,077 - GFF6481 0.86 -0.1
61,077 - GFF6481 0.86 -0.2
61,210 + +0.8
61,211 - -0.2
61,241 + -1.3
61,241 + +0.4
61,242 - +0.1
61,242 - -1.2
61,242 - -0.1
61,242 - -0.7
61,242 - -0.1
61,242 - +0.4
61,242 - -0.3
61,355 + GFF6482 0.12 -1.5
61,356 - GFF6482 0.12 -0.8
61,356 - GFF6482 0.12 -1.3
61,451 + GFF6482 0.27 -0.8
61,451 + GFF6482 0.27 -1.9
61,451 + GFF6482 0.27 -0.6
61,451 + GFF6482 0.27 -0.7
61,451 + GFF6482 0.27 +1.2
61,452 - GFF6482 0.28 +0.1
61,452 - GFF6482 0.28 +0.1
61,457 + GFF6482 0.28 +0.2
61,458 - GFF6482 0.29 +0.5
61,458 - GFF6482 0.29 -0.0
61,490 + GFF6482 0.34 -0.1
61,692 - GFF6482 0.66 -0.1
62,362 + GFF6483 0.71 +0.3
62,362 + GFF6483 0.71 +0.4
62,362 + GFF6483 0.71 +1.0
62,362 + GFF6483 0.71 +0.1
62,362 + GFF6483 0.71 +0.3
62,362 + GFF6483 0.71 -0.7
62,362 + GFF6483 0.71 -0.5
62,363 - GFF6483 0.72 -1.4
62,363 - GFF6483 0.72 +0.4
62,363 - GFF6483 0.72 +0.1
62,363 - GFF6483 0.72 -0.2
62,363 - GFF6483 0.72 -0.8
62,363 - GFF6483 0.72 -0.1
62,363 - GFF6483 0.72 +0.6
62,363 - GFF6483 0.72 +0.5
62,383 + GFF6483 0.74 -1.7
62,383 + GFF6483 0.74 -0.5
62,383 + GFF6483 0.74 +0.7
62,383 + GFF6483 0.74 +0.7
62,384 - GFF6483 0.75 -0.1
62,384 - GFF6483 0.75 +0.0

Or see this region's nucleotide sequence