Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6430 and GFF6431 are separated by 112 nucleotides GFF6431 and GFF6432 overlap by 4 nucleotides GFF6432 and GFF6433 are separated by 1 nucleotides
GFF6430 - L-carnitine dehydratase/bile acid-inducible protein F, at 3,345 to 4,517
GFF6430
GFF6431 - hypothetical protein, at 4,630 to 5,406
GFF6431
GFF6432 - no description, at 5,403 to 6,131
GFF6432
GFF6433 - hypothetical protein, at 6,133 to 11,397
GFF6433
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.541 kb on + strand at 4.542 kb on - strand at 4.542 kb on - strand at 4.554 kb on + strand at 4.631 kb on + strand at 4.748 kb on + strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.916 kb on + strand, within GFF6431 at 5.159 kb on + strand, within GFF6431 at 5.336 kb on + strand at 5.530 kb on + strand, within GFF6432 at 5.531 kb on - strand, within GFF6432 at 6.284 kb on + strand at 6.285 kb on - strand at 6.662 kb on + strand, within GFF6433 at 6.663 kb on - strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.729 kb on - strand, within GFF6433 at 6.815 kb on + strand, within GFF6433 at 6.815 kb on + strand, within GFF6433 at 6.944 kb on + strand, within GFF6433 at 6.995 kb on + strand, within GFF6433 at 6.995 kb on + strand, within GFF6433 at 6.996 kb on - strand, within GFF6433 at 7.055 kb on + strand, within GFF6433 at 7.055 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.104 kb on - strand, within GFF6433 at 7.104 kb on - strand, within GFF6433 at 7.104 kb on - strand, within GFF6433
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 4,541 + -1.4 4,542 - +0.1 4,542 - -1.7 4,554 + -0.5 4,631 + -0.7 4,748 + GFF6431 0.15 +0.2 4,749 - GFF6431 0.15 +0.5 4,749 - GFF6431 0.15 -0.1 4,749 - GFF6431 0.15 +2.5 4,916 + GFF6431 0.37 +0.4 5,159 + GFF6431 0.68 -0.7 5,336 + -0.0 5,530 + GFF6432 0.17 -1.5 5,531 - GFF6432 0.18 -0.7 6,284 + -1.2 6,285 - +0.8 6,662 + GFF6433 0.10 -0.1 6,663 - GFF6433 0.10 -0.3 6,728 + GFF6433 0.11 -2.1 6,728 + GFF6433 0.11 -0.1 6,728 + GFF6433 0.11 -0.7 6,728 + GFF6433 0.11 -0.7 6,729 - GFF6433 0.11 +0.3 6,815 + GFF6433 0.13 +0.9 6,815 + GFF6433 0.13 +0.1 6,944 + GFF6433 0.15 -0.7 6,995 + GFF6433 0.16 -0.2 6,995 + GFF6433 0.16 -0.9 6,996 - GFF6433 0.16 +2.5 7,055 + GFF6433 0.18 -0.5 7,055 + GFF6433 0.18 -0.4 7,103 + GFF6433 0.18 -0.8 7,103 + GFF6433 0.18 -0.2 7,103 + GFF6433 0.18 -1.8 7,103 + GFF6433 0.18 +1.3 7,104 - GFF6433 0.18 -0.1 7,104 - GFF6433 0.18 -0.9 7,104 - GFF6433 0.18 +0.9
Or see this region's nucleotide sequence