Strain Fitness in Variovorax sp. SCN45 around GFF6138

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6137 and GFF6138 are separated by 20 nucleotidesGFF6138 and GFF6139 are separated by 161 nucleotides GFF6137 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 38,655 to 40,493 GFF6137 GFF6138 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 40,514 to 41,140 GFF6138 GFF6139 - Serine/threonine kinase, at 41,302 to 42,588 GFF6139 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.802 kb on + strand, within GFF6137at 39.802 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 40.073 kb on - strand, within GFF6137at 40.254 kb on + strand, within GFF6137at 40.254 kb on + strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.541 kb on - strandat 40.809 kb on + strand, within GFF6138at 40.809 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.974 kb on + strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.080 kb on + strandat 41.157 kb on + strandat 41.158 kb on - strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.174 kb on - strandat 41.174 kb on - strandat 41.239 kb on + strandat 41.239 kb on + strandat 41.240 kb on - strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.248 kb on - strandat 41.287 kb on + strandat 41.294 kb on - strandat 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.788 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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39,800 + GFF6137 0.62 -0.1
39,800 + GFF6137 0.62 -1.3
39,800 + GFF6137 0.62 +0.2
39,800 + GFF6137 0.62 +0.9
39,801 - GFF6137 0.62 -0.4
39,801 - GFF6137 0.62 -0.5
39,801 - GFF6137 0.62 -0.9
39,801 - GFF6137 0.62 -0.8
39,801 - GFF6137 0.62 -1.1
39,801 - GFF6137 0.62 +0.0
39,802 + GFF6137 0.62 -1.5
39,802 + GFF6137 0.62 -0.1
39,895 + GFF6137 0.67 +0.4
39,895 + GFF6137 0.67 -0.2
39,895 + GFF6137 0.67 -0.5
39,895 + GFF6137 0.67 -0.9
39,896 - GFF6137 0.67 -1.2
39,896 - GFF6137 0.67 +0.3
39,896 - GFF6137 0.67 +1.2
39,896 - GFF6137 0.67 -1.6
39,904 + GFF6137 0.68 +0.1
39,904 + GFF6137 0.68 +0.2
39,904 + GFF6137 0.68 -1.8
39,946 + GFF6137 0.70 +0.1
39,946 + GFF6137 0.70 -0.2
39,946 + GFF6137 0.70 +0.8
39,946 + GFF6137 0.70 -1.8
39,946 + GFF6137 0.70 -1.3
39,946 + GFF6137 0.70 -0.3
39,946 + GFF6137 0.70 -0.5
39,946 + GFF6137 0.70 +0.4
39,946 + GFF6137 0.70 +0.2
39,946 + GFF6137 0.70 -0.8
39,946 + GFF6137 0.70 -1.0
39,947 - GFF6137 0.70 +0.5
39,947 - GFF6137 0.70 +1.2
39,947 - GFF6137 0.70 -0.1
39,947 - GFF6137 0.70 +0.1
39,947 - GFF6137 0.70 +1.0
39,947 - GFF6137 0.70 -0.8
39,947 - GFF6137 0.70 +0.1
39,947 - GFF6137 0.70 -0.3
39,947 - GFF6137 0.70 +1.0
39,947 - GFF6137 0.70 -0.6
40,073 - GFF6137 0.77 +0.2
40,254 + GFF6137 0.87 -1.1
40,254 + GFF6137 0.87 +0.7
40,255 - GFF6137 0.87 +0.4
40,255 - GFF6137 0.87 -0.5
40,255 - GFF6137 0.87 -2.1
40,255 - GFF6137 0.87 +0.2
40,541 - -2.5
40,809 + GFF6138 0.47 -0.1
40,809 + GFF6138 0.47 -1.0
40,868 + GFF6138 0.56 +0.0
40,868 + GFF6138 0.56 -1.0
40,868 + GFF6138 0.56 +0.4
40,869 - GFF6138 0.57 -0.8
40,869 - GFF6138 0.57 +1.2
40,974 + GFF6138 0.73 -1.0
40,975 - GFF6138 0.74 -0.9
40,975 - GFF6138 0.74 -0.6
40,975 - GFF6138 0.74 +0.1
41,015 + GFF6138 0.80 -0.3
41,015 + GFF6138 0.80 -0.7
41,015 + GFF6138 0.80 -0.8
41,016 - GFF6138 0.80 -1.4
41,016 - GFF6138 0.80 -0.2
41,080 + -0.4
41,157 + +0.6
41,158 - -0.8
41,173 + -0.5
41,173 + +0.4
41,173 + -0.4
41,173 + -0.3
41,173 + +1.8
41,173 + +1.9
41,174 - -0.6
41,174 - +0.3
41,239 + -0.1
41,239 + -1.6
41,240 - +0.2
41,247 + -0.1
41,247 + -0.4
41,247 + +0.4
41,248 - -0.1
41,287 + +0.1
41,294 - +0.5
41,713 + GFF6139 0.32 -0.1
41,713 + GFF6139 0.32 -1.1
41,713 + GFF6139 0.32 -0.2
41,714 - GFF6139 0.32 -0.6
41,714 - GFF6139 0.32 -0.1
41,783 - GFF6139 0.37 -0.3
41,783 - GFF6139 0.37 +1.8
41,783 - GFF6139 0.37 -0.4
41,788 + GFF6139 0.38 -0.5
42,037 + GFF6139 0.57 -0.5
42,037 + GFF6139 0.57 +0.4
42,037 + GFF6139 0.57 +0.1
42,037 + GFF6139 0.57 -0.7
42,038 - GFF6139 0.57 -0.8
42,038 - GFF6139 0.57 -0.8
42,038 - GFF6139 0.57 -0.4
42,038 - GFF6139 0.57 +1.2

Or see this region's nucleotide sequence