Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5957 and GFF5958 are separated by 7 nucleotides GFF5958 and GFF5959 are separated by 2 nucleotides GFF5959 and GFF5960 are separated by 56 nucleotides GFF5960 and GFF5961 overlap by 4 nucleotides
GFF5957 - Uncharacterized MFS-type transporter, at 12,644 to 13,969
GFF5957
GFF5958 - FIG00537018: hypothetical protein, at 13,977 to 14,696
GFF5958
GFF5959 - Putative amidase R03093, at 14,699 to 16,048
GFF5959
GFF5960 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 16,105 to 16,719
GFF5960
GFF5961 - Acetyltransferase, at 16,716 to 17,210
GFF5961
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.724 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.775 kb on + strand, within GFF5957 at 13.796 kb on + strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.889 kb on + strand at 13.890 kb on - strand at 13.890 kb on - strand at 13.890 kb on - strand at 14.166 kb on + strand, within GFF5958 at 14.166 kb on + strand, within GFF5958 at 14.167 kb on - strand, within GFF5958 at 14.322 kb on + strand, within GFF5958 at 14.664 kb on + strand at 14.664 kb on + strand at 14.831 kb on + strand at 14.832 kb on - strand at 14.832 kb on - strand at 14.936 kb on + strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 15.717 kb on - strand, within GFF5959 at 15.717 kb on - strand, within GFF5959 at 16.104 kb on + strand at 16.271 kb on - strand, within GFF5960 at 16.271 kb on - strand, within GFF5960 at 16.392 kb on + strand, within GFF5960 at 16.392 kb on + strand, within GFF5960 at 16.462 kb on + strand, within GFF5960 at 16.463 kb on - strand, within GFF5960 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 13,724 + GFF5957 0.81 -0.8 13,724 + GFF5957 0.81 -0.5 13,775 + GFF5957 0.85 +0.1 13,796 + GFF5957 0.87 -0.3 13,797 - GFF5957 0.87 +0.8 13,797 - GFF5957 0.87 +2.6 13,797 - GFF5957 0.87 +0.9 13,889 + +1.8 13,890 - -0.3 13,890 - +1.1 13,890 - +0.2 14,166 + GFF5958 0.26 -1.4 14,166 + GFF5958 0.26 -0.5 14,167 - GFF5958 0.26 -0.9 14,322 + GFF5958 0.48 -0.5 14,664 + +2.1 14,664 + -0.6 14,831 + -0.0 14,832 - -0.5 14,832 - +1.3 14,936 + GFF5959 0.18 -1.1 14,937 - GFF5959 0.18 +1.6 14,937 - GFF5959 0.18 -0.4 14,937 - GFF5959 0.18 -0.6 15,717 - GFF5959 0.75 -2.7 15,717 - GFF5959 0.75 -0.2 16,104 + +1.6 16,271 - GFF5960 0.27 -0.1 16,271 - GFF5960 0.27 +0.2 16,392 + GFF5960 0.47 -0.4 16,392 + GFF5960 0.47 -0.0 16,462 + GFF5960 0.58 -0.3 16,463 - GFF5960 0.58 -0.8 16,803 + GFF5961 0.18 +1.1 16,803 + GFF5961 0.18 +0.0 16,803 + GFF5961 0.18 +0.0 16,803 + GFF5961 0.18 +1.3 16,804 - GFF5961 0.18 +0.2 16,804 - GFF5961 0.18 -1.2 16,804 - GFF5961 0.18 -0.4 16,804 - GFF5961 0.18 -1.6
Or see this region's nucleotide sequence