Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF580 and GFF581 are separated by 22 nucleotides GFF581 and GFF582 overlap by 44 nucleotides GFF582 and GFF583 are separated by 156 nucleotides GFF583 and GFF584 are separated by 4 nucleotides
GFF580 - Rhodanese domain protein UPF0176, Betaproteobacterial subgroup, at 627,726 to 628,517
GFF580
GFF581 - Tricarboxylate transport transcriptional regulator TctD, at 628,540 to 629,250
GFF581
GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754
GFF582
GFF583 - Tripartite tricarboxylate transporter TctB family, at 630,911 to 631,435
GFF583
GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014
GFF584
Position (kb) 629
630
631 Strain fitness (log2 ratio) -2
-1
0
1
2 at 628.365 kb on + strand, within GFF580 at 628.366 kb on - strand, within GFF580 at 628.366 kb on - strand, within GFF580 at 628.392 kb on + strand, within GFF580 at 628.392 kb on + strand, within GFF580 at 628.393 kb on - strand, within GFF580 at 628.393 kb on - strand, within GFF580 at 628.673 kb on - strand, within GFF581 at 628.673 kb on - strand, within GFF581 at 628.939 kb on + strand, within GFF581 at 628.939 kb on + strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.340 kb on - strand at 629.340 kb on - strand at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.279 kb on - strand, within GFF582 at 630.279 kb on - strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.780 kb on - strand at 630.794 kb on + strand at 630.795 kb on - strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.816 kb on + strand at 630.816 kb on + strand at 630.878 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.983 kb on + strand, within GFF583 at 630.983 kb on + strand, within GFF583 at 630.984 kb on - strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.456 kb on + strand at 631.456 kb on + strand at 631.457 kb on - strand at 631.457 kb on - strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.584 kb on - strand at 631.584 kb on - strand at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.663 kb on - strand, within GFF584
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 628,365 + GFF580 0.81 +0.5 628,366 - GFF580 0.81 +0.5 628,366 - GFF580 0.81 -1.3 628,392 + GFF580 0.84 -0.5 628,392 + GFF580 0.84 -0.2 628,393 - GFF580 0.84 -1.3 628,393 - GFF580 0.84 -0.9 628,673 - GFF581 0.19 -0.8 628,673 - GFF581 0.19 +0.1 628,939 + GFF581 0.56 +0.3 628,939 + GFF581 0.56 +0.0 628,940 - GFF581 0.56 -2.6 628,940 - GFF581 0.56 -0.3 628,940 - GFF581 0.56 -0.7 628,940 - GFF581 0.56 +0.3 628,940 - GFF581 0.56 -0.7 629,185 + -0.7 629,185 + -0.3 629,185 + -0.7 629,185 + -1.5 629,185 + +0.7 629,185 + -0.5 629,185 + -0.7 629,185 + -0.7 629,185 + +0.2 629,186 - -0.4 629,186 - -1.1 629,186 - +0.1 629,186 - -0.4 629,186 - -0.1 629,186 - -0.7 629,186 - +0.2 629,186 - -0.2 629,186 - +0.3 629,186 - -0.5 629,339 + -0.1 629,339 + -0.7 629,339 + +0.7 629,339 + -0.7 629,339 + -0.6 629,339 + -0.8 629,340 - +0.3 629,340 - -0.3 629,498 + GFF582 0.19 -0.1 629,498 + GFF582 0.19 -0.1 629,498 + GFF582 0.19 -0.9 629,498 + GFF582 0.19 +0.3 629,498 + GFF582 0.19 +0.3 629,498 + GFF582 0.19 -2.3 629,498 + GFF582 0.19 +1.0 629,498 + GFF582 0.19 -0.3 629,498 + GFF582 0.19 -0.6 629,498 + GFF582 0.19 -0.3 629,499 - GFF582 0.19 +0.6 629,499 - GFF582 0.19 +0.4 629,499 - GFF582 0.19 -1.1 629,499 - GFF582 0.19 +0.5 629,504 + GFF582 0.19 -0.1 629,504 + GFF582 0.19 -1.1 629,504 + GFF582 0.19 -0.2 629,505 - GFF582 0.19 +0.8 629,505 - GFF582 0.19 +0.4 629,505 - GFF582 0.19 -1.7 629,636 + GFF582 0.28 -0.0 629,636 + GFF582 0.28 -0.6 629,636 + GFF582 0.28 -1.0 629,693 + GFF582 0.31 +0.5 629,693 + GFF582 0.31 -0.7 629,693 + GFF582 0.31 +0.1 629,693 + GFF582 0.31 +0.1 629,693 + GFF582 0.31 +0.5 629,694 - GFF582 0.31 +0.4 629,694 - GFF582 0.31 -0.9 629,694 - GFF582 0.31 -1.1 629,694 - GFF582 0.31 +0.1 629,694 - GFF582 0.31 -0.6 629,721 - GFF582 0.33 -0.5 629,721 - GFF582 0.33 +1.0 629,721 - GFF582 0.33 +0.2 629,721 - GFF582 0.33 -2.2 629,721 - GFF582 0.33 -0.7 630,278 + GFF582 0.69 +0.4 630,278 + GFF582 0.69 -0.2 630,278 + GFF582 0.69 -0.0 630,278 + GFF582 0.69 -1.1 630,278 + GFF582 0.69 +0.3 630,278 + GFF582 0.69 +0.1 630,279 - GFF582 0.69 -0.1 630,279 - GFF582 0.69 -2.5 630,449 + GFF582 0.80 -0.7 630,449 + GFF582 0.80 -1.5 630,449 + GFF582 0.80 -0.1 630,449 + GFF582 0.80 -2.2 630,450 - GFF582 0.80 +0.3 630,450 - GFF582 0.80 +1.8 630,450 - GFF582 0.80 +0.5 630,450 - GFF582 0.80 +1.7 630,780 - -0.6 630,794 + -0.1 630,795 - -0.3 630,802 + +0.0 630,802 + -1.7 630,802 + -0.1 630,802 + -0.9 630,810 + -0.9 630,810 + +0.1 630,810 + -0.6 630,810 + +0.2 630,811 - -0.2 630,811 - +0.1 630,811 - -1.7 630,811 - +0.3 630,811 - -0.1 630,811 - -0.2 630,811 - +0.1 630,811 - +0.1 630,811 - +1.1 630,811 - +0.7 630,811 - +1.6 630,811 - -0.3 630,816 + -1.2 630,816 + -0.9 630,878 + +0.3 630,910 + +1.3 630,910 + -1.1 630,910 + -0.7 630,910 + -0.5 630,910 + +0.3 630,910 + +0.1 630,910 + -1.1 630,910 + -1.1 630,910 + -0.4 630,910 + -0.3 630,910 + -1.0 630,910 + -0.0 630,910 + -0.2 630,910 + -0.1 630,910 + -0.5 630,911 - -0.6 630,911 - -0.6 630,911 - -0.2 630,911 - +0.0 630,911 - +0.3 630,911 - -0.1 630,911 - -0.7 630,911 - -0.7 630,911 - -0.1 630,911 - +0.7 630,911 - -0.4 630,911 - -0.2 630,911 - -0.9 630,911 - -0.1 630,911 - +0.3 630,911 - -0.4 630,911 - -0.7 630,983 + GFF583 0.14 +0.5 630,983 + GFF583 0.14 -0.1 630,984 - GFF583 0.14 -0.2 631,025 + GFF583 0.22 -0.4 631,025 + GFF583 0.22 +2.1 631,025 + GFF583 0.22 +1.3 631,025 + GFF583 0.22 +0.4 631,025 + GFF583 0.22 +0.5 631,026 - GFF583 0.22 -0.2 631,026 - GFF583 0.22 -0.4 631,026 - GFF583 0.22 -0.3 631,456 + -0.8 631,456 + +1.7 631,457 - -0.7 631,457 - -1.5 631,583 + -0.7 631,583 + +1.0 631,583 + -0.5 631,584 - -1.1 631,584 - -1.2 631,602 + GFF584 0.10 -1.7 631,602 + GFF584 0.10 -0.3 631,602 + GFF584 0.10 +0.5 631,602 + GFF584 0.10 -0.9 631,602 + GFF584 0.10 -0.4 631,602 + GFF584 0.10 +0.5 631,603 - GFF584 0.10 -0.4 631,603 - GFF584 0.10 +0.5 631,650 + GFF584 0.13 +0.4 631,650 + GFF584 0.13 -0.7 631,651 - GFF584 0.13 +1.0 631,651 - GFF584 0.13 +1.9 631,651 - GFF584 0.13 +0.3 631,663 - GFF584 0.14 -1.1
Or see this region's nucleotide sequence