Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF579 and GFF580 are separated by 62 nucleotides GFF580 and GFF581 are separated by 22 nucleotides GFF581 and GFF582 overlap by 44 nucleotides
GFF579 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 624,145 to 627,663
GFF579
GFF580 - Rhodanese domain protein UPF0176, Betaproteobacterial subgroup, at 627,726 to 628,517
GFF580
GFF581 - Tricarboxylate transport transcriptional regulator TctD, at 628,540 to 629,250
GFF581
GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754
GFF582
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 627.674 kb on + strand at 627.674 kb on + strand at 627.674 kb on + strand at 627.674 kb on + strand at 627.674 kb on + strand at 627.674 kb on + strand at 627.674 kb on + strand at 627.675 kb on - strand at 627.675 kb on - strand at 627.675 kb on - strand at 627.675 kb on - strand at 627.712 kb on + strand at 627.712 kb on + strand at 627.712 kb on + strand at 627.712 kb on + strand at 627.712 kb on + strand at 627.712 kb on + strand at 627.713 kb on - strand at 627.713 kb on - strand at 627.713 kb on - strand at 627.713 kb on - strand at 627.743 kb on + strand at 627.743 kb on + strand at 627.753 kb on + strand at 627.753 kb on + strand at 627.753 kb on + strand at 627.754 kb on - strand at 627.858 kb on - strand, within GFF580 at 627.858 kb on - strand, within GFF580 at 627.892 kb on - strand, within GFF580 at 627.893 kb on - strand, within GFF580 at 628.365 kb on + strand, within GFF580 at 628.366 kb on - strand, within GFF580 at 628.366 kb on - strand, within GFF580 at 628.392 kb on + strand, within GFF580 at 628.392 kb on + strand, within GFF580 at 628.393 kb on - strand, within GFF580 at 628.393 kb on - strand, within GFF580 at 628.673 kb on - strand, within GFF581 at 628.673 kb on - strand, within GFF581 at 628.939 kb on + strand, within GFF581 at 628.939 kb on + strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 628.940 kb on - strand, within GFF581 at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.185 kb on + strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.186 kb on - strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.339 kb on + strand at 629.340 kb on - strand at 629.340 kb on - strand at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.498 kb on + strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.499 kb on - strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.504 kb on + strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.505 kb on - strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.636 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.693 kb on + strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.694 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582 at 629.721 kb on - strand, within GFF582
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 627,674 + +0.2 627,674 + +1.5 627,674 + +0.7 627,674 + -0.6 627,674 + +1.0 627,674 + +0.4 627,674 + +0.8 627,675 - +1.3 627,675 - +0.7 627,675 - -0.1 627,675 - -1.5 627,712 + +0.3 627,712 + -1.1 627,712 + -1.5 627,712 + -1.9 627,712 + -0.1 627,712 + -0.6 627,713 - +1.6 627,713 - -0.8 627,713 - -0.7 627,713 - -0.2 627,743 + +0.5 627,743 + -1.1 627,753 + -2.3 627,753 + +1.0 627,753 + +0.5 627,754 - -0.5 627,858 - GFF580 0.17 -1.1 627,858 - GFF580 0.17 +1.5 627,892 - GFF580 0.21 -0.6 627,893 - GFF580 0.21 +0.3 628,365 + GFF580 0.81 +0.5 628,366 - GFF580 0.81 +0.5 628,366 - GFF580 0.81 -1.3 628,392 + GFF580 0.84 -0.5 628,392 + GFF580 0.84 -0.2 628,393 - GFF580 0.84 -1.3 628,393 - GFF580 0.84 -0.9 628,673 - GFF581 0.19 -0.8 628,673 - GFF581 0.19 +0.1 628,939 + GFF581 0.56 +0.3 628,939 + GFF581 0.56 +0.0 628,940 - GFF581 0.56 -2.6 628,940 - GFF581 0.56 -0.3 628,940 - GFF581 0.56 -0.7 628,940 - GFF581 0.56 +0.3 628,940 - GFF581 0.56 -0.7 629,185 + -0.7 629,185 + -0.3 629,185 + -0.7 629,185 + -1.5 629,185 + +0.7 629,185 + -0.5 629,185 + -0.7 629,185 + -0.7 629,185 + +0.2 629,186 - -0.4 629,186 - -1.1 629,186 - +0.1 629,186 - -0.4 629,186 - -0.1 629,186 - -0.7 629,186 - +0.2 629,186 - -0.2 629,186 - +0.3 629,186 - -0.5 629,339 + -0.1 629,339 + -0.7 629,339 + +0.7 629,339 + -0.7 629,339 + -0.6 629,339 + -0.8 629,340 - +0.3 629,340 - -0.3 629,498 + GFF582 0.19 -0.1 629,498 + GFF582 0.19 -0.1 629,498 + GFF582 0.19 -0.9 629,498 + GFF582 0.19 +0.3 629,498 + GFF582 0.19 +0.3 629,498 + GFF582 0.19 -2.3 629,498 + GFF582 0.19 +1.0 629,498 + GFF582 0.19 -0.3 629,498 + GFF582 0.19 -0.6 629,498 + GFF582 0.19 -0.3 629,499 - GFF582 0.19 +0.6 629,499 - GFF582 0.19 +0.4 629,499 - GFF582 0.19 -1.1 629,499 - GFF582 0.19 +0.5 629,504 + GFF582 0.19 -0.1 629,504 + GFF582 0.19 -1.1 629,504 + GFF582 0.19 -0.2 629,505 - GFF582 0.19 +0.8 629,505 - GFF582 0.19 +0.4 629,505 - GFF582 0.19 -1.7 629,636 + GFF582 0.28 -0.0 629,636 + GFF582 0.28 -0.6 629,636 + GFF582 0.28 -1.0 629,693 + GFF582 0.31 +0.5 629,693 + GFF582 0.31 -0.7 629,693 + GFF582 0.31 +0.1 629,693 + GFF582 0.31 +0.1 629,693 + GFF582 0.31 +0.5 629,694 - GFF582 0.31 +0.4 629,694 - GFF582 0.31 -0.9 629,694 - GFF582 0.31 -1.1 629,694 - GFF582 0.31 +0.1 629,694 - GFF582 0.31 -0.6 629,721 - GFF582 0.33 -0.5 629,721 - GFF582 0.33 +1.0 629,721 - GFF582 0.33 +0.2 629,721 - GFF582 0.33 -2.2 629,721 - GFF582 0.33 -0.7
Or see this region's nucleotide sequence