Strain Fitness in Variovorax sp. SCN45 around GFF5590

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5588 and GFF5589 overlap by 4 nucleotidesGFF5589 and GFF5590 are separated by 135 nucleotidesGFF5590 and GFF5591 are separated by 138 nucleotides GFF5588 - hypothetical protein, at 208,844 to 209,125 GFF5588 GFF5589 - Methionine aminopeptidase (EC 3.4.11.18), at 209,122 to 209,919 GFF5589 GFF5590 - no description, at 210,055 to 210,951 GFF5590 GFF5591 - Amidohydrolase family enzyme, at 211,090 to 212,712 GFF5591 Position (kb) 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.323 kb on + strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.632 kb on + strand, within GFF5589at 209.633 kb on - strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.687 kb on - strand, within GFF5589at 210.463 kb on + strand, within GFF5590at 210.464 kb on - strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.928 kb on + strandat 210.929 kb on - strandat 210.929 kb on - strandat 210.950 kb on - strandat 211.025 kb on + strandat 211.025 kb on + strandat 211.026 kb on - strandat 211.106 kb on - strandat 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.499 kb on - strand, within GFF5591at 211.499 kb on - strand, within GFF5591at 211.633 kb on + strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.886 kb on - strand, within GFF5591at 211.886 kb on - strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.933 kb on + strand, within GFF5591at 211.933 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.951 kb on + strand, within GFF5591at 211.951 kb on + strand, within GFF5591at 211.951 kb on + strand, within GFF5591

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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209,294 + GFF5589 0.22 +2.2
209,294 + GFF5589 0.22 -0.6
209,294 + GFF5589 0.22 -1.6
209,294 + GFF5589 0.22 -0.3
209,294 + GFF5589 0.22 -0.3
209,295 - GFF5589 0.22 -0.4
209,295 - GFF5589 0.22 +0.3
209,295 - GFF5589 0.22 -1.7
209,295 - GFF5589 0.22 +0.5
209,295 - GFF5589 0.22 -0.8
209,295 - GFF5589 0.22 -1.1
209,323 + GFF5589 0.25 -0.7
209,324 - GFF5589 0.25 -2.9
209,324 - GFF5589 0.25 +0.4
209,467 + GFF5589 0.43 -0.5
209,467 + GFF5589 0.43 -1.3
209,467 + GFF5589 0.43 -0.6
209,467 + GFF5589 0.43 +0.3
209,467 + GFF5589 0.43 +0.0
209,467 + GFF5589 0.43 +0.2
209,467 + GFF5589 0.43 +0.7
209,467 + GFF5589 0.43 +0.4
209,467 + GFF5589 0.43 +0.3
209,467 + GFF5589 0.43 -0.6
209,467 + GFF5589 0.43 -1.0
209,467 + GFF5589 0.43 -0.1
209,467 + GFF5589 0.43 -1.1
209,467 + GFF5589 0.43 -0.1
209,467 + GFF5589 0.43 +0.5
209,467 + GFF5589 0.43 -1.7
209,467 + GFF5589 0.43 +0.3
209,468 - GFF5589 0.43 +1.5
209,468 - GFF5589 0.43 -0.1
209,468 - GFF5589 0.43 -0.8
209,468 - GFF5589 0.43 +0.9
209,468 - GFF5589 0.43 -1.0
209,468 - GFF5589 0.43 -1.1
209,468 - GFF5589 0.43 -0.2
209,468 - GFF5589 0.43 +0.2
209,468 - GFF5589 0.43 -0.6
209,468 - GFF5589 0.43 -0.5
209,468 - GFF5589 0.43 -0.3
209,468 - GFF5589 0.43 -1.3
209,468 - GFF5589 0.43 +0.2
209,468 - GFF5589 0.43 -1.6
209,468 - GFF5589 0.43 -1.7
209,518 + GFF5589 0.50 -0.3
209,518 + GFF5589 0.50 -1.3
209,518 + GFF5589 0.50 +0.3
209,518 + GFF5589 0.50 -1.1
209,518 + GFF5589 0.50 -0.2
209,518 + GFF5589 0.50 +0.3
209,518 + GFF5589 0.50 -0.1
209,518 + GFF5589 0.50 -0.5
209,519 - GFF5589 0.50 +0.2
209,519 - GFF5589 0.50 -0.3
209,519 - GFF5589 0.50 -0.1
209,519 - GFF5589 0.50 +1.0
209,519 - GFF5589 0.50 -0.4
209,519 - GFF5589 0.50 -0.5
209,632 + GFF5589 0.64 +0.4
209,633 - GFF5589 0.64 +0.5
209,659 + GFF5589 0.67 -0.0
209,659 + GFF5589 0.67 +0.6
209,659 + GFF5589 0.67 +0.2
209,659 + GFF5589 0.67 -1.4
209,659 + GFF5589 0.67 -0.6
209,659 + GFF5589 0.67 +0.6
209,659 + GFF5589 0.67 +1.6
209,659 + GFF5589 0.67 -1.2
209,660 - GFF5589 0.67 -1.0
209,660 - GFF5589 0.67 +0.1
209,660 - GFF5589 0.67 +0.2
209,660 - GFF5589 0.67 -0.6
209,660 - GFF5589 0.67 -1.6
209,687 - GFF5589 0.71 -0.6
210,463 + GFF5590 0.45 +0.6
210,464 - GFF5590 0.46 -0.8
210,544 + GFF5590 0.55 +0.4
210,544 + GFF5590 0.55 +0.3
210,544 + GFF5590 0.55 -0.6
210,544 + GFF5590 0.55 +0.4
210,544 + GFF5590 0.55 +0.4
210,544 + GFF5590 0.55 +1.9
210,544 + GFF5590 0.55 +1.0
210,544 + GFF5590 0.55 +0.6
210,544 + GFF5590 0.55 -1.7
210,544 + GFF5590 0.55 +0.5
210,544 + GFF5590 0.55 -0.8
210,544 + GFF5590 0.55 +0.7
210,544 + GFF5590 0.55 -1.1
210,544 + GFF5590 0.55 +0.1
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 +0.7
210,545 - GFF5590 0.55 +0.0
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 -0.3
210,545 - GFF5590 0.55 +0.9
210,545 - GFF5590 0.55 +1.3
210,545 - GFF5590 0.55 -0.1
210,545 - GFF5590 0.55 -0.0
210,545 - GFF5590 0.55 -0.3
210,545 - GFF5590 0.55 -0.8
210,592 + GFF5590 0.60 -0.1
210,592 + GFF5590 0.60 +0.0
210,592 + GFF5590 0.60 -0.8
210,593 - GFF5590 0.60 -0.1
210,593 - GFF5590 0.60 +0.6
210,593 - GFF5590 0.60 -0.3
210,928 + -0.4
210,929 - +0.4
210,929 - +1.4
210,950 - +0.3
211,025 + +0.3
211,025 + +0.3
211,026 - +0.5
211,106 - +0.7
211,492 + GFF5591 0.25 -0.7
211,492 + GFF5591 0.25 +0.0
211,492 + GFF5591 0.25 -0.1
211,492 + GFF5591 0.25 -1.4
211,492 + GFF5591 0.25 +1.7
211,492 + GFF5591 0.25 +0.3
211,492 + GFF5591 0.25 +1.4
211,493 - GFF5591 0.25 -0.2
211,493 - GFF5591 0.25 +0.9
211,493 - GFF5591 0.25 +1.6
211,493 - GFF5591 0.25 +0.3
211,493 - GFF5591 0.25 -1.3
211,493 - GFF5591 0.25 -1.3
211,493 - GFF5591 0.25 +0.6
211,493 - GFF5591 0.25 -0.4
211,498 + GFF5591 0.25 -0.4
211,498 + GFF5591 0.25 -0.5
211,498 + GFF5591 0.25 -0.2
211,498 + GFF5591 0.25 -0.3
211,498 + GFF5591 0.25 -1.3
211,499 - GFF5591 0.25 +0.3
211,499 - GFF5591 0.25 +1.1
211,633 + GFF5591 0.33 +0.5
211,634 - GFF5591 0.34 +2.3
211,634 - GFF5591 0.34 -0.1
211,634 - GFF5591 0.34 -0.6
211,634 - GFF5591 0.34 -0.2
211,634 - GFF5591 0.34 -0.6
211,885 + GFF5591 0.49 +0.2
211,885 + GFF5591 0.49 -0.4
211,885 + GFF5591 0.49 +3.6
211,885 + GFF5591 0.49 +1.1
211,885 + GFF5591 0.49 -0.8
211,885 + GFF5591 0.49 -0.6
211,886 - GFF5591 0.49 -1.3
211,886 - GFF5591 0.49 +0.0
211,888 + GFF5591 0.49 +2.5
211,888 + GFF5591 0.49 -0.1
211,888 + GFF5591 0.49 -0.6
211,888 + GFF5591 0.49 -0.0
211,888 + GFF5591 0.49 +0.0
211,889 - GFF5591 0.49 -0.5
211,889 - GFF5591 0.49 -0.1
211,889 - GFF5591 0.49 +0.2
211,889 - GFF5591 0.49 -0.3
211,889 - GFF5591 0.49 +1.4
211,889 - GFF5591 0.49 +0.0
211,889 - GFF5591 0.49 -2.2
211,933 + GFF5591 0.52 +0.3
211,933 + GFF5591 0.52 +0.2
211,945 + GFF5591 0.53 +0.0
211,945 + GFF5591 0.53 -0.3
211,945 + GFF5591 0.53 -0.3
211,945 + GFF5591 0.53 -0.6
211,945 + GFF5591 0.53 -0.1
211,945 + GFF5591 0.53 -1.0
211,945 + GFF5591 0.53 -0.3
211,946 - GFF5591 0.53 -1.2
211,946 - GFF5591 0.53 +0.3
211,946 - GFF5591 0.53 +0.2
211,946 - GFF5591 0.53 +0.9
211,946 - GFF5591 0.53 -0.7
211,951 + GFF5591 0.53 -0.4
211,951 + GFF5591 0.53 -0.6
211,951 + GFF5591 0.53 -1.1

Or see this region's nucleotide sequence