Strain Fitness in Variovorax sp. SCN45 around GFF5483

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
110,152	+		GFF5481	0.64	-0.1
110,152	+		GFF5481	0.64	-0.6
110,152	+		GFF5481	0.64	-0.8
110,152	+		GFF5481	0.64	+0.5
110,152	+		GFF5481	0.64	+1.0
110,152	+		GFF5481	0.64	-0.1
110,152	+		GFF5481	0.64	-0.6
110,152	+		GFF5481	0.64	+0.2
110,152	+		GFF5481	0.64	-0.0
110,152	+		GFF5481	0.64	-1.5
110,152	+		GFF5481	0.64	+2.1
110,152	+		GFF5481	0.64	+0.3
110,152	+		GFF5481	0.64	-0.8
110,152	+		GFF5481	0.64	-1.9
110,153	-		GFF5481	0.64	-1.4
110,153	-		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	+1.0
110,153	-		GFF5481	0.64	+1.1
110,153	-		GFF5481	0.64	+0.2
110,153	-		GFF5481	0.64	+0.3
110,153	-		GFF5481	0.64	+0.7
110,153	-		GFF5481	0.64	-0.4
110,153	-		GFF5481	0.64	+0.0
110,153	-		GFF5481	0.64	-1.7
110,153	-		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	+0.3
110,153	-		GFF5481	0.64	+2.6
110,153	-		GFF5481	0.64	-0.4
110,153	-		GFF5481	0.64	-0.0
110,197	+		GFF5481	0.77	-1.7
110,197	+		GFF5481	0.77	+1.7
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	+0.5
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-1.3
110,197	+		GFF5481	0.77	-0.0
110,197	+		GFF5481	0.77	+1.2
110,197	+		GFF5481	0.77	-0.7
110,197	+		GFF5481	0.77	+0.2
110,197	+		GFF5481	0.77	-1.5
110,197	+		GFF5481	0.77	-0.5
110,197	+		GFF5481	0.77	+0.7
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.1
110,198	-		GFF5481	0.77	-2.2
110,198	-		GFF5481	0.77	+1.0
110,198	-		GFF5481	0.77	+0.2
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-0.2
110,198	-		GFF5481	0.77	-0.5
110,198	-		GFF5481	0.77	+0.7
110,198	-		GFF5481	0.77	-0.2
110,200	+		GFF5481	0.78	+0.6
110,200	+		GFF5481	0.78	+2.0
110,200	+		GFF5481	0.78	+0.1
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	-0.7
110,200	+		GFF5481	0.78	+0.7
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	+0.9
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	-1.3
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	+1.3
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-1.1
110,200	+		GFF5481	0.78	+0.7
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-1.3
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	+0.7
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-0.5
110,200	+		GFF5481	0.78	+0.9
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-0.8
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.9
110,201	-		GFF5481	0.78	+1.0
110,201	-		GFF5481	0.78	-0.8
110,201	-		GFF5481	0.78	+0.2
110,201	-		GFF5481	0.78	-1.8
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	+0.2
110,201	-		GFF5481	0.78	+1.0
110,201	-		GFF5481	0.78	-1.5
110,201	-		GFF5481	0.78	-0.7
110,201	-		GFF5481	0.78	-0.2
110,201	-		GFF5481	0.78	+0.1
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-0.8
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-0.5
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.6
110,267	-				-0.5
110,327	+				+0.5
110,328	-				-0.1
110,560	+		GFF5482	0.37	+0.0
110,560	+		GFF5482	0.37	+0.2
110,560	+		GFF5482	0.37	+0.7
110,560	+		GFF5482	0.37	+0.7
110,560	+		GFF5482	0.37	-0.7
110,560	+		GFF5482	0.37	-0.1
110,560	+		GFF5482	0.37	-0.0
110,560	+		GFF5482	0.37	-1.5
110,560	+		GFF5482	0.37	+1.2
110,560	+		GFF5482	0.37	+0.7
110,560	+		GFF5482	0.37	+0.3
110,561	-		GFF5482	0.38	-0.5
110,561	-		GFF5482	0.38	+0.1
110,561	-		GFF5482	0.38	-0.2
110,561	-		GFF5482	0.38	-0.4
110,561	-		GFF5482	0.38	-1.6
110,561	-		GFF5482	0.38	+0.1
110,561	-		GFF5482	0.38	+0.7
110,561	-		GFF5482	0.38	-1.1
110,561	-		GFF5482	0.38	-1.8
110,561	-		GFF5482	0.38	+0.2
110,561	-		GFF5482	0.38	-0.6
110,561	-		GFF5482	0.38	-0.1
110,561	-		GFF5482	0.38	-1.2
110,701	+		GFF5482	0.67	-0.2
110,701	+		GFF5482	0.67	-0.1
110,701	+		GFF5482	0.67	+0.2
110,701	+		GFF5482	0.67	-0.1
110,701	+		GFF5482	0.67	-0.6
110,702	-		GFF5482	0.67	-1.1
110,702	-		GFF5482	0.67	-0.4
110,702	-		GFF5482	0.67	+0.4
110,924	+				-1.4
110,925	-				+0.1
110,925	-				+0.2
110,941	+				+0.4
110,941	+				+0.0
110,941	+				+0.1
110,941	+				-0.6
110,941	+				-0.3
110,941	+				-1.1
110,941	+				+0.3
110,941	+				+0.7
110,941	+				-0.1
110,941	+				-0.3
110,941	+				+0.5
110,941	+				+0.7
110,941	+				-0.2
110,941	+				+0.0
110,941	+				-1.3
110,941	+				+0.9
110,941	+				-0.1
110,941	+				-0.4
110,941	+				+1.1
110,941	+				-0.4
110,941	+				-0.1
110,941	+				-0.4
110,941	+				-1.6
110,941	+				-0.7
110,942	-				-0.8
110,942	-				-2.1
110,942	-				-0.1
110,942	-				+0.4
110,942	-				-0.4
110,942	-				-2.2
110,942	-				-0.1
110,942	-				-0.7
110,942	-				-0.0
110,942	-				-0.1
110,942	-				+0.4
110,942	-				+0.2
110,942	-				-1.3
110,942	-				-0.2
110,942	-				-0.2
110,942	-				+0.7
110,942	-				+0.1
110,942	-				+0.3
110,992	+				-1.8
110,992	+				+0.0
110,992	+				+0.4
110,992	+				+0.2
110,992	+				-0.1
110,992	+				-0.3
110,992	+				-1.1
110,992	+				-0.4
110,992	+				-1.0
110,993	-				+1.7
110,993	-				-0.6
110,993	-				-1.2
110,993	-				+0.2
110,993	-				-0.4
110,993	-				+0.3
110,993	-				-0.0
110,993	-				-0.1
111,021	+				+0.2
111,021	+				+0.4
111,021	+				+0.1
111,021	+				-0.6
111,022	-				+1.2
111,022	-				-0.3
111,022	-				-0.2
111,074	+				+0.5
111,075	-				+0.1
111,075	-				+0.7
111,075	-				-1.6
111,075	-				+0.4
111,075	-				+0.7
111,075	-				+0.4
111,075	-				-0.1
111,075	-				+0.7
111,100	+				-1.8
111,100	+				-0.6
111,100	+				-2.3
111,100	+				-1.0
111,100	+				+1.7
111,100	+				-0.1
111,100	+				-1.2
111,100	+				-1.1
111,100	+				-1.0
111,100	+				-0.6
111,100	+				-0.3
111,100	+				+0.0
111,100	+				+1.7
111,100	+				-0.2
111,100	+				-0.4
111,101	-				+0.1
111,101	-				-0.5
111,101	-				-0.6
111,101	-				+0.6
111,101	-				-0.9
111,101	-				-0.2
111,101	-				-1.2
111,101	-				-1.0
111,101	-				-2.0
111,101	-				-0.7
111,101	-				+0.5
111,112	+				-0.3
111,112	+				+0.4
111,112	+				-0.3
111,113	-				-0.1
111,221	-				-0.1
111,221	-				+0.3
111,244	+				-0.6
111,245	-				-2.0
111,245	-				-0.3
111,245	-				+0.7
111,410	-		GFF5483	0.10	+0.3
111,481	+		GFF5483	0.12	+0.0
111,482	-		GFF5483	0.12	+0.1
111,482	-		GFF5483	0.12	-1.5
111,482	-		GFF5483	0.12	-0.5
111,617	+		GFF5483	0.16	-0.1
111,617	+		GFF5483	0.16	+1.7
111,617	+		GFF5483	0.16	+0.4
111,617	+		GFF5483	0.16	-1.0
111,617	+		GFF5483	0.16	-1.6
111,617	+		GFF5483	0.16	-1.1
111,617	+		GFF5483	0.16	-1.0
111,617	+		GFF5483	0.16	+0.7
111,617	+		GFF5483	0.16	-0.5
111,617	+		GFF5483	0.16	+0.2
111,617	+		GFF5483	0.16	+1.1
111,617	+		GFF5483	0.16	+0.2
111,617	+		GFF5483	0.16	-0.7
111,617	+		GFF5483	0.16	+0.1
111,617	+		GFF5483	0.16	-0.6
111,617	+		GFF5483	0.16	-0.8
111,617	+		GFF5483	0.16	-1.7
111,617	+		GFF5483	0.16	+0.0
111,617	+		GFF5483	0.16	-0.3
111,617	+		GFF5483	0.16	-0.6
111,617	+		GFF5483	0.16	-1.5
111,617	+		GFF5483	0.16	+0.0
111,618	-		GFF5483	0.16	+0.9
111,618	-		GFF5483	0.16	-0.3
111,618	-		GFF5483	0.16	-0.8
111,618	-		GFF5483	0.16	+0.3
111,618	-		GFF5483	0.16	-0.3
111,618	-		GFF5483	0.16	-2.3
111,618	-		GFF5483	0.16	-0.7
111,618	-		GFF5483	0.16	-0.6
111,618	-		GFF5483	0.16	+0.4
111,618	-		GFF5483	0.16	+0.3
111,618	-		GFF5483	0.16	-0.3
111,618	-		GFF5483	0.16	-0.4
111,826	+		GFF5483	0.22	-0.3
111,826	+		GFF5483	0.22	-0.5
111,826	+		GFF5483	0.22	+0.5
111,826	+		GFF5483	0.22	-0.1
111,826	+		GFF5483	0.22	-1.1
111,826	+		GFF5483	0.22	+0.7
111,826	+		GFF5483	0.22	+0.3
111,826	+		GFF5483	0.22	+0.9
111,826	+		GFF5483	0.22	+0.6
111,826	+		GFF5483	0.22	-0.7
111,826	+		GFF5483	0.22	+0.6
111,826	+		GFF5483	0.22	-1.3
111,826	+		GFF5483	0.22	+0.2
111,826	+		GFF5483	0.22	+0.2
111,826	+		GFF5483	0.22	+1.0
111,826	+		GFF5483	0.22	-2.2
111,826	+		GFF5483	0.22	-1.2
111,826	+		GFF5483	0.22	-0.6
111,826	+		GFF5483	0.22	-0.3
111,826	+		GFF5483	0.22	+0.2
111,826	+		GFF5483	0.22	-0.1
111,826	+		GFF5483	0.22	-0.9
111,826	+		GFF5483	0.22	+0.0
111,826	+		GFF5483	0.22	-1.2
111,826	+		GFF5483	0.22	+1.6
111,826	+		GFF5483	0.22	-1.4
111,827	-		GFF5483	0.22	+0.3
111,827	-		GFF5483	0.22	-0.4
111,827	-		GFF5483	0.22	-2.0
111,827	-		GFF5483	0.22	-0.3
111,827	-		GFF5483	0.22	-0.1
111,827	-		GFF5483	0.22	+0.0
111,827	-		GFF5483	0.22	+0.2
111,827	-		GFF5483	0.22	-0.1
111,827	-		GFF5483	0.22	-0.4
111,827	-		GFF5483	0.22	+0.1
111,827	-		GFF5483	0.22	+0.3
111,827	-		GFF5483	0.22	-0.4
111,827	-		GFF5483	0.22	-1.0
111,827	-		GFF5483	0.22	-0.8
111,827	-		GFF5483	0.22	-1.0
111,827	-		GFF5483	0.22	+1.2
111,827	-		GFF5483	0.22	+1.0
111,827	-		GFF5483	0.22	-1.0
111,827	-		GFF5483	0.22	-1.0
111,827	-		GFF5483	0.22	+0.0
111,827	-		GFF5483	0.22	-1.6
111,827	-		GFF5483	0.22	-0.3
111,827	-		GFF5483	0.22	-0.9
111,827	-		GFF5483	0.22	-1.1
111,827	-		GFF5483	0.22	-0.9
111,827	-		GFF5483	0.22	-1.4
111,835	+		GFF5483	0.22	-1.7
111,835	+		GFF5483	0.22	-0.3
111,835	+		GFF5483	0.22	-1.3
111,836	-		GFF5483	0.22	+0.5
111,836	-		GFF5483	0.22	+0.4
111,836	-		GFF5483	0.22	+0.0
111,836	-		GFF5483	0.22	-1.5
111,836	-		GFF5483	0.22	-0.6
111,850	+		GFF5483	0.23	-0.7
111,850	+		GFF5483	0.23	-0.7
111,850	+		GFF5483	0.23	-2.2
111,850	+		GFF5483	0.23	-0.1
111,850	+		GFF5483	0.23	-0.4
111,850	+		GFF5483	0.23	-0.5
111,850	+		GFF5483	0.23	-0.4
111,850	+		GFF5483	0.23	-0.1
111,850	+		GFF5483	0.23	-0.2
111,850	+		GFF5483	0.23	-0.1
111,850	+		GFF5483	0.23	+0.2
111,850	+		GFF5483	0.23	+0.1
111,850	+		GFF5483	0.23	-0.3
111,851	-		GFF5483	0.23	-1.2
111,851	-		GFF5483	0.23	-1.4
111,851	-		GFF5483	0.23	+1.7
111,851	-		GFF5483	0.23	+0.9
111,851	-		GFF5483	0.23	-1.5
111,851	-		GFF5483	0.23	-0.7
111,851	-		GFF5483	0.23	-0.5
111,851	-		GFF5483	0.23	-0.1
112,111	+		GFF5483	0.30	+1.3
112,111	+		GFF5483	0.30	-0.8
112,111	+		GFF5483	0.30	-0.6
112,111	+		GFF5483	0.30	+1.1
112,111	+		GFF5483	0.30	-0.8
112,112	-		GFF5483	0.30	-0.1
112,112	-		GFF5483	0.30	-0.1
112,112	-		GFF5483	0.30	-0.6
112,112	-		GFF5483	0.30	-2.3
112,112	-		GFF5483	0.30	-1.1
112,112	-		GFF5483	0.30	-0.3
112,132	+		GFF5483	0.30	+0.2
112,132	+		GFF5483	0.30	-0.3
112,132	+		GFF5483	0.30	+0.2
112,132	+		GFF5483	0.30	+0.0
112,132	+		GFF5483	0.30	-1.1
112,132	+		GFF5483	0.30	-0.6
112,132	+		GFF5483	0.30	+1.1
112,132	+		GFF5483	0.30	-0.6
112,132	+		GFF5483	0.30	-0.8
112,132	+		GFF5483	0.30	-1.4
112,132	+		GFF5483	0.30	-0.1
112,132	+		GFF5483	0.30	-0.0
112,132	+		GFF5483	0.30	-0.7
112,132	+		GFF5483	0.30	-0.9
112,132	+		GFF5483	0.30	+1.4
112,132	+		GFF5483	0.30	-0.7
112,132	+		GFF5483	0.30	-1.8
112,132	+		GFF5483	0.30	-0.6
112,132	+		GFF5483	0.30	+0.3
112,132	+		GFF5483	0.30	-0.6
112,133	-		GFF5483	0.30	+0.0
112,133	-		GFF5483	0.30	+0.9
112,133	-		GFF5483	0.30	-0.4
112,133	-		GFF5483	0.30	-1.6
112,133	-		GFF5483	0.30	-0.8
112,133	-		GFF5483	0.30	+0.3
112,133	-		GFF5483	0.30	+0.1
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