Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5463 and GFF5464 overlap by 8 nucleotides GFF5464 and GFF5465 overlap by 4 nucleotides GFF5465 and GFF5466 are separated by 45 nucleotides GFF5466 and GFF5467 are separated by 140 nucleotides
GFF5463 - RidA/YER057c/UK114 superfamily protein, at 93,773 to 94,240
GFF5463
GFF5464 - Transcriptional regulator, AcrR family, at 94,233 to 94,919
GFF5464
GFF5465 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 94,916 to 95,884
GFF5465
GFF5466 - NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 95,930 to 96,520
GFF5466
GFF5467 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 96,661 to 97,689
GFF5467
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 94.070 kb on + strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.071 kb on - strand, within GFF5463 at 94.092 kb on - strand, within GFF5463 at 94.092 kb on - strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.100 kb on + strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.101 kb on - strand, within GFF5463 at 94.125 kb on - strand, within GFF5463 at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.214 kb on + strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.215 kb on - strand at 94.234 kb on + strand at 94.234 kb on + strand at 94.235 kb on - strand at 94.235 kb on - strand at 94.235 kb on - strand at 94.285 kb on + strand at 94.286 kb on - strand at 94.328 kb on - strand, within GFF5464 at 94.328 kb on - strand, within GFF5464 at 94.330 kb on + strand, within GFF5464 at 94.330 kb on + strand, within GFF5464 at 94.357 kb on + strand, within GFF5464 at 94.357 kb on + strand, within GFF5464 at 94.358 kb on - strand, within GFF5464 at 94.358 kb on - strand, within GFF5464 at 94.443 kb on + strand, within GFF5464 at 94.444 kb on - strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.699 kb on + strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.700 kb on - strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.702 kb on + strand, within GFF5464 at 94.703 kb on - strand, within GFF5464 at 94.703 kb on - strand, within GFF5464 at 94.703 kb on - strand, within GFF5464 at 94.825 kb on + strand, within GFF5464 at 94.826 kb on - strand, within GFF5464 at 95.037 kb on - strand, within GFF5465 at 95.082 kb on + strand, within GFF5465 at 95.215 kb on - strand, within GFF5465 at 95.215 kb on - strand, within GFF5465 at 95.215 kb on - strand, within GFF5465 at 95.270 kb on + strand, within GFF5465 at 95.270 kb on + strand, within GFF5465 at 95.270 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.301 kb on + strand, within GFF5465 at 95.302 kb on - strand, within GFF5465 at 95.302 kb on - strand, within GFF5465 at 95.302 kb on - strand, within GFF5465 at 95.302 kb on - strand, within GFF5465 at 95.682 kb on + strand, within GFF5465 at 95.683 kb on - strand, within GFF5465 at 95.721 kb on + strand, within GFF5465 at 95.775 kb on + strand, within GFF5465 at 95.775 kb on + strand, within GFF5465 at 95.775 kb on + strand, within GFF5465 at 95.776 kb on - strand, within GFF5465 at 95.923 kb on + strand at 95.923 kb on + strand at 95.923 kb on + strand at 95.923 kb on + strand at 95.923 kb on + strand at 95.924 kb on - strand at 95.924 kb on - strand at 95.924 kb on - strand at 95.924 kb on - strand at 95.924 kb on - strand at 95.924 kb on - strand at 95.927 kb on + strand at 95.928 kb on - strand at 95.928 kb on - strand at 95.930 kb on + strand at 96.274 kb on - strand, within GFF5466 at 96.274 kb on - strand, within GFF5466 at 96.274 kb on - strand, within GFF5466 at 96.357 kb on + strand, within GFF5466 at 96.357 kb on + strand, within GFF5466 at 96.406 kb on - strand, within GFF5466 at 96.406 kb on - strand, within GFF5466 at 96.462 kb on + strand at 96.590 kb on - strand at 96.590 kb on - strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.662 kb on + strand at 96.663 kb on - strand at 96.758 kb on + strand at 96.758 kb on + strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.759 kb on - strand at 96.785 kb on + strand, within GFF5467 at 96.786 kb on - strand, within GFF5467
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 94,070 + GFF5463 0.63 +0.7 94,071 - GFF5463 0.64 +0.2 94,071 - GFF5463 0.64 -0.4 94,071 - GFF5463 0.64 -0.3 94,071 - GFF5463 0.64 -0.4 94,071 - GFF5463 0.64 -0.1 94,092 - GFF5463 0.68 -1.0 94,092 - GFF5463 0.68 -0.9 94,100 + GFF5463 0.70 -0.3 94,100 + GFF5463 0.70 +0.7 94,100 + GFF5463 0.70 +1.3 94,100 + GFF5463 0.70 -2.6 94,100 + GFF5463 0.70 -0.0 94,100 + GFF5463 0.70 +0.6 94,100 + GFF5463 0.70 -0.2 94,101 - GFF5463 0.70 -0.6 94,101 - GFF5463 0.70 -0.3 94,101 - GFF5463 0.70 -1.5 94,101 - GFF5463 0.70 +0.1 94,101 - GFF5463 0.70 -1.3 94,101 - GFF5463 0.70 +0.1 94,101 - GFF5463 0.70 -0.6 94,125 - GFF5463 0.75 -0.8 94,214 + +0.1 94,214 + +0.1 94,214 + +1.0 94,214 + +0.6 94,214 + +0.6 94,214 + +1.4 94,214 + +0.3 94,214 + +0.2 94,214 + +0.7 94,214 + -0.5 94,214 + -0.6 94,214 + +1.7 94,215 - -0.2 94,215 - +1.1 94,215 - -0.5 94,215 - -0.8 94,215 - -0.3 94,215 - +1.5 94,215 - -1.8 94,215 - -0.8 94,215 - -0.7 94,215 - -0.3 94,215 - +0.5 94,215 - +0.4 94,234 + -0.0 94,234 + -0.9 94,235 - +0.1 94,235 - -0.1 94,235 - -0.6 94,285 + -1.4 94,286 - -2.6 94,328 - GFF5464 0.14 -0.1 94,328 - GFF5464 0.14 -0.7 94,330 + GFF5464 0.14 -1.3 94,330 + GFF5464 0.14 -1.3 94,357 + GFF5464 0.18 +0.4 94,357 + GFF5464 0.18 -0.2 94,358 - GFF5464 0.18 +0.0 94,358 - GFF5464 0.18 +0.2 94,443 + GFF5464 0.31 +0.9 94,444 - GFF5464 0.31 -0.3 94,699 + GFF5464 0.68 -0.3 94,699 + GFF5464 0.68 -0.1 94,699 + GFF5464 0.68 -0.8 94,699 + GFF5464 0.68 +1.2 94,699 + GFF5464 0.68 -1.3 94,699 + GFF5464 0.68 +0.2 94,699 + GFF5464 0.68 -1.2 94,700 - GFF5464 0.68 +2.7 94,700 - GFF5464 0.68 -2.0 94,700 - GFF5464 0.68 -1.6 94,700 - GFF5464 0.68 +0.2 94,702 + GFF5464 0.68 -0.6 94,702 + GFF5464 0.68 -1.1 94,702 + GFF5464 0.68 +0.4 94,702 + GFF5464 0.68 +0.6 94,702 + GFF5464 0.68 +2.2 94,703 - GFF5464 0.68 -0.4 94,703 - GFF5464 0.68 -0.1 94,703 - GFF5464 0.68 +2.2 94,825 + GFF5464 0.86 -0.6 94,826 - GFF5464 0.86 -1.8 95,037 - GFF5465 0.12 -1.7 95,082 + GFF5465 0.17 -1.0 95,215 - GFF5465 0.31 +2.2 95,215 - GFF5465 0.31 -1.9 95,215 - GFF5465 0.31 -1.0 95,270 + GFF5465 0.37 +0.3 95,270 + GFF5465 0.37 -1.6 95,270 + GFF5465 0.37 -0.9 95,301 + GFF5465 0.40 -1.1 95,301 + GFF5465 0.40 -0.2 95,301 + GFF5465 0.40 -1.3 95,301 + GFF5465 0.40 -1.8 95,301 + GFF5465 0.40 +0.3 95,301 + GFF5465 0.40 +1.5 95,301 + GFF5465 0.40 -3.2 95,301 + GFF5465 0.40 -0.8 95,301 + GFF5465 0.40 +0.8 95,301 + GFF5465 0.40 -1.4 95,301 + GFF5465 0.40 -0.5 95,301 + GFF5465 0.40 -0.9 95,302 - GFF5465 0.40 -1.5 95,302 - GFF5465 0.40 -1.3 95,302 - GFF5465 0.40 -0.8 95,302 - GFF5465 0.40 -0.0 95,682 + GFF5465 0.79 +1.0 95,683 - GFF5465 0.79 -0.7 95,721 + GFF5465 0.83 +0.1 95,775 + GFF5465 0.89 -0.6 95,775 + GFF5465 0.89 -0.3 95,775 + GFF5465 0.89 +0.4 95,776 - GFF5465 0.89 +0.3 95,923 + -0.2 95,923 + -0.6 95,923 + -1.3 95,923 + -1.2 95,923 + -0.0 95,924 - -0.4 95,924 - -1.5 95,924 - -2.8 95,924 - +0.2 95,924 - +0.5 95,924 - -0.5 95,927 + -0.2 95,928 - -0.6 95,928 - -0.8 95,930 + -0.8 96,274 - GFF5466 0.58 -0.6 96,274 - GFF5466 0.58 -1.2 96,274 - GFF5466 0.58 +0.3 96,357 + GFF5466 0.72 -0.1 96,357 + GFF5466 0.72 -0.4 96,406 - GFF5466 0.81 -0.6 96,406 - GFF5466 0.81 -0.8 96,462 + -1.5 96,590 - +0.9 96,590 - +0.5 96,662 + +0.7 96,662 + -0.8 96,662 + -0.1 96,662 + +0.3 96,662 + +1.3 96,662 + -0.6 96,662 + -1.9 96,663 - +0.2 96,758 + +1.5 96,758 + -0.5 96,759 - -0.8 96,759 - +2.9 96,759 - -3.1 96,759 - -0.1 96,759 - -0.2 96,759 - +0.4 96,759 - +0.5 96,759 - -0.0 96,785 + GFF5467 0.12 +0.4 96,786 - GFF5467 0.12 -0.1
Or see this region's nucleotide sequence