Strain Fitness in Variovorax sp. SCN45 around GFF5131

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5130 and GFF5131 are separated by 17 nucleotidesGFF5131 and GFF5132 are separated by 52 nucleotides GFF5130 - hypothetical protein, at 229,735 to 230,991 GFF5130 GFF5131 - no description, at 231,009 to 231,443 GFF5131 GFF5132 - no description, at 231,496 to 232,404 GFF5132 Position (kb) 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.047 kb on + strand, within GFF5130at 230.047 kb on + strand, within GFF5130at 230.048 kb on - strand, within GFF5130at 230.048 kb on - strand, within GFF5130at 230.048 kb on - strand, within GFF5130at 230.048 kb on - strand, within GFF5130at 230.048 kb on - strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.089 kb on + strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.090 kb on - strand, within GFF5130at 230.107 kb on + strand, within GFF5130at 230.107 kb on + strand, within GFF5130at 230.108 kb on - strand, within GFF5130at 230.108 kb on - strand, within GFF5130at 230.164 kb on + strand, within GFF5130at 230.164 kb on + strand, within GFF5130at 230.164 kb on + strand, within GFF5130at 230.164 kb on + strand, within GFF5130at 230.165 kb on - strand, within GFF5130at 230.165 kb on - strand, within GFF5130at 230.165 kb on - strand, within GFF5130at 230.165 kb on - strand, within GFF5130at 230.165 kb on - strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.272 kb on + strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.273 kb on - strand, within GFF5130at 230.297 kb on - strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 231.040 kb on - strandat 231.055 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.145 kb on - strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.363 kb on + strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.460 kb on + strandat 231.460 kb on + strandat 231.460 kb on + strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.530 kb on - strandat 231.530 kb on - strandat 231.542 kb on + strandat 231.542 kb on + strandat 231.543 kb on - strandat 231.543 kb on - strandat 231.565 kb on + strandat 231.565 kb on + strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.901 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.995 kb on - strand, within GFF5132at 232.118 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.239 kb on - strand, within GFF5132at 232.373 kb on + strandat 232.373 kb on + strandat 232.373 kb on + strandat 232.374 kb on - strandat 232.374 kb on - strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.418 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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230,047 + GFF5130 0.25 +1.0
230,047 + GFF5130 0.25 +1.2
230,048 - GFF5130 0.25 -0.3
230,048 - GFF5130 0.25 +0.7
230,048 - GFF5130 0.25 -0.2
230,048 - GFF5130 0.25 +0.3
230,048 - GFF5130 0.25 -0.9
230,089 + GFF5130 0.28 +0.4
230,089 + GFF5130 0.28 -1.2
230,089 + GFF5130 0.28 +0.2
230,089 + GFF5130 0.28 -0.0
230,089 + GFF5130 0.28 -1.1
230,089 + GFF5130 0.28 +0.2
230,089 + GFF5130 0.28 +0.2
230,089 + GFF5130 0.28 -0.5
230,089 + GFF5130 0.28 +0.0
230,089 + GFF5130 0.28 -0.2
230,089 + GFF5130 0.28 +0.2
230,089 + GFF5130 0.28 +0.1
230,089 + GFF5130 0.28 -0.2
230,090 - GFF5130 0.28 -0.2
230,090 - GFF5130 0.28 -0.3
230,090 - GFF5130 0.28 -0.2
230,090 - GFF5130 0.28 -0.5
230,090 - GFF5130 0.28 -1.5
230,090 - GFF5130 0.28 -0.9
230,090 - GFF5130 0.28 -1.3
230,090 - GFF5130 0.28 -0.4
230,090 - GFF5130 0.28 +0.1
230,107 + GFF5130 0.30 -0.3
230,107 + GFF5130 0.30 -0.2
230,108 - GFF5130 0.30 -1.8
230,108 - GFF5130 0.30 -0.3
230,164 + GFF5130 0.34 +0.4
230,164 + GFF5130 0.34 -0.0
230,164 + GFF5130 0.34 -0.8
230,164 + GFF5130 0.34 +0.1
230,165 - GFF5130 0.34 -0.9
230,165 - GFF5130 0.34 -0.5
230,165 - GFF5130 0.34 -0.2
230,165 - GFF5130 0.34 +1.7
230,165 - GFF5130 0.34 -0.6
230,272 + GFF5130 0.43 -1.2
230,272 + GFF5130 0.43 -0.1
230,272 + GFF5130 0.43 -0.2
230,272 + GFF5130 0.43 -0.6
230,272 + GFF5130 0.43 -0.8
230,272 + GFF5130 0.43 +0.2
230,272 + GFF5130 0.43 -0.3
230,272 + GFF5130 0.43 +0.2
230,272 + GFF5130 0.43 -0.6
230,272 + GFF5130 0.43 -0.6
230,272 + GFF5130 0.43 -0.7
230,273 - GFF5130 0.43 -0.1
230,273 - GFF5130 0.43 +1.2
230,273 - GFF5130 0.43 +0.7
230,273 - GFF5130 0.43 -0.7
230,273 - GFF5130 0.43 -2.5
230,273 - GFF5130 0.43 -0.8
230,273 - GFF5130 0.43 +0.3
230,273 - GFF5130 0.43 +0.1
230,273 - GFF5130 0.43 +0.1
230,273 - GFF5130 0.43 +0.1
230,273 - GFF5130 0.43 -0.5
230,273 - GFF5130 0.43 +0.3
230,273 - GFF5130 0.43 +0.7
230,273 - GFF5130 0.43 -0.6
230,273 - GFF5130 0.43 -0.5
230,297 - GFF5130 0.45 -0.4
230,551 + GFF5130 0.65 +0.0
230,551 + GFF5130 0.65 +0.0
230,551 + GFF5130 0.65 +0.1
230,551 + GFF5130 0.65 -1.2
230,552 - GFF5130 0.65 -1.8
230,552 - GFF5130 0.65 -0.5
230,669 - GFF5130 0.74 -0.3
230,669 - GFF5130 0.74 -0.1
230,669 - GFF5130 0.74 -0.4
231,040 - +0.5
231,055 + GFF5131 0.11 -0.8
231,144 + GFF5131 0.31 -0.9
231,144 + GFF5131 0.31 +0.0
231,144 + GFF5131 0.31 +0.3
231,144 + GFF5131 0.31 -0.0
231,144 + GFF5131 0.31 +0.3
231,144 + GFF5131 0.31 +0.4
231,144 + GFF5131 0.31 -0.6
231,144 + GFF5131 0.31 +0.8
231,144 + GFF5131 0.31 +0.4
231,145 - GFF5131 0.31 +1.1
231,246 + GFF5131 0.54 +0.6
231,246 + GFF5131 0.54 -0.6
231,246 + GFF5131 0.54 +0.1
231,246 + GFF5131 0.54 -0.6
231,246 + GFF5131 0.54 +0.1
231,247 - GFF5131 0.55 -0.1
231,247 - GFF5131 0.55 +0.5
231,247 - GFF5131 0.55 -2.1
231,247 - GFF5131 0.55 +0.1
231,247 - GFF5131 0.55 +0.3
231,247 - GFF5131 0.55 -0.4
231,247 - GFF5131 0.55 -0.6
231,247 - GFF5131 0.55 +0.9
231,247 - GFF5131 0.55 -1.9
231,333 + GFF5131 0.74 +0.2
231,333 + GFF5131 0.74 -0.2
231,333 + GFF5131 0.74 +1.4
231,333 + GFF5131 0.74 -0.3
231,333 + GFF5131 0.74 -0.5
231,333 + GFF5131 0.74 -1.8
231,333 + GFF5131 0.74 +1.0
231,334 - GFF5131 0.75 -0.7
231,334 - GFF5131 0.75 +0.0
231,334 - GFF5131 0.75 -0.3
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 -1.6
231,334 - GFF5131 0.75 +0.7
231,334 - GFF5131 0.75 -0.4
231,334 - GFF5131 0.75 +0.7
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 -0.4
231,334 - GFF5131 0.75 -1.5
231,334 - GFF5131 0.75 +0.4
231,363 + GFF5131 0.81 +0.1
231,364 - GFF5131 0.82 +0.4
231,364 - GFF5131 0.82 +0.9
231,460 + -0.6
231,460 + -0.4
231,460 + +0.4
231,461 - -0.3
231,461 - -0.3
231,461 - -0.1
231,461 - +0.3
231,461 - +0.8
231,461 - -0.9
231,461 - -0.7
231,461 - -1.3
231,530 - +0.0
231,530 - -0.2
231,542 + -0.1
231,542 + +0.7
231,543 - -1.4
231,543 - -0.3
231,565 + +0.5
231,565 + -1.2
231,566 - -0.4
231,566 - -0.1
231,566 - -0.2
231,712 + GFF5132 0.24 +0.4
231,712 + GFF5132 0.24 +0.0
231,712 + GFF5132 0.24 -0.2
231,712 + GFF5132 0.24 -0.4
231,713 - GFF5132 0.24 +0.2
231,713 - GFF5132 0.24 -2.0
231,901 + GFF5132 0.45 -1.6
231,944 + GFF5132 0.49 -0.6
231,944 + GFF5132 0.49 +0.4
231,944 + GFF5132 0.49 +1.1
231,945 - GFF5132 0.49 -0.9
231,945 - GFF5132 0.49 -0.5
231,994 + GFF5132 0.55 +1.1
231,994 + GFF5132 0.55 +0.4
231,994 + GFF5132 0.55 +0.8
231,994 + GFF5132 0.55 +1.6
231,994 + GFF5132 0.55 -2.1
231,994 + GFF5132 0.55 -1.1
231,995 - GFF5132 0.55 -0.2
232,118 + GFF5132 0.68 +0.5
232,129 + GFF5132 0.70 -1.3
232,129 + GFF5132 0.70 -1.1
232,129 + GFF5132 0.70 -0.2
232,129 + GFF5132 0.70 -1.2
232,130 - GFF5132 0.70 +0.9
232,130 - GFF5132 0.70 +0.5
232,233 + GFF5132 0.81 +0.7
232,233 + GFF5132 0.81 -0.1
232,233 + GFF5132 0.81 -0.4
232,233 + GFF5132 0.81 -0.5
232,233 + GFF5132 0.81 -0.3
232,234 - GFF5132 0.81 -0.1
232,234 - GFF5132 0.81 +3.3
232,239 - GFF5132 0.82 -0.1
232,373 + +1.1
232,373 + -1.4
232,373 + -0.2
232,374 - +0.5
232,374 - -0.5
232,417 + -0.3
232,417 + -0.3
232,417 + -0.6
232,418 - +0.1
232,420 - +1.4
232,420 - +0.2
232,420 - -0.2

Or see this region's nucleotide sequence