Strain Fitness in Variovorax sp. SCN45 around GFF4991

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4989 and GFF4990 are separated by 60 nucleotidesGFF4990 and GFF4991 are separated by 91 nucleotidesGFF4991 and GFF4992 are separated by 140 nucleotidesGFF4992 and GFF4993 are separated by 6 nucleotides GFF4989 - Transcriptional regulator, LysR family, at 89,837 to 90,733 GFF4989 GFF4990 - Acyl-CoA hydrolase (EC 3.1.2.20), at 90,794 to 91,243 GFF4990 GFF4991 - Polyhydroxyalkanoate granule-associated protein PhaF, at 91,335 to 91,802 GFF4991 GFF4992 - Transcriptional regulator, AcrR family, at 91,943 to 92,668 GFF4992 GFF4993 - putative tetratricopeptide repeat family protein, at 92,675 to 93,517 GFF4993 Position (kb) 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.638 kb on + strand, within GFF4989at 90.639 kb on - strand, within GFF4989at 90.751 kb on + strandat 90.751 kb on + strandat 90.751 kb on + strandat 90.752 kb on - strandat 90.926 kb on + strand, within GFF4990at 90.926 kb on + strand, within GFF4990at 90.927 kb on - strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.254 kb on + strandat 91.254 kb on + strandat 91.268 kb on + strandat 91.268 kb on + strandat 91.268 kb on + strandat 91.269 kb on - strandat 91.292 kb on - strandat 91.489 kb on - strand, within GFF4991at 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.087 kb on + strand, within GFF4992at 92.088 kb on - strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.129 kb on + strand, within GFF4992at 92.129 kb on + strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.243 kb on + strand, within GFF4992at 92.243 kb on + strand, within GFF4992at 92.244 kb on - strand, within GFF4992at 92.244 kb on - strand, within GFF4992at 92.244 kb on - strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.426 kb on + strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.427 kb on - strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.438 kb on + strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.439 kb on - strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.444 kb on + strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.445 kb on - strand, within GFF4992at 92.537 kb on + strand, within GFF4992at 92.538 kb on - strand, within GFF4992at 92.538 kb on - strand, within GFF4992at 92.586 kb on - strand, within GFF4992at 92.656 kb on + strandat 92.657 kb on - strandat 92.666 kb on + strandat 92.666 kb on + strandat 92.666 kb on + strandat 92.667 kb on - strandat 92.763 kb on - strand, within GFF4993at 92.763 kb on - strand, within GFF4993at 92.763 kb on - strand, within GFF4993at 92.763 kb on - strand, within GFF4993at 92.780 kb on + strand, within GFF4993

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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90,638 + GFF4989 0.89 +1.7
90,639 - GFF4989 0.89 -0.9
90,751 + +0.7
90,751 + +0.5
90,751 + -0.9
90,752 - -0.9
90,926 + GFF4990 0.29 -0.6
90,926 + GFF4990 0.29 -0.4
90,927 - GFF4990 0.30 +0.8
91,013 + GFF4990 0.49 +2.0
91,013 + GFF4990 0.49 +0.7
91,013 + GFF4990 0.49 +0.7
91,013 + GFF4990 0.49 +0.7
91,014 - GFF4990 0.49 -0.9
91,014 - GFF4990 0.49 +0.7
91,014 - GFF4990 0.49 -0.4
91,014 - GFF4990 0.49 -0.4
91,014 - GFF4990 0.49 +0.4
91,014 - GFF4990 0.49 +0.1
91,014 - GFF4990 0.49 +0.2
91,014 - GFF4990 0.49 -0.9
91,014 - GFF4990 0.49 -1.3
91,014 - GFF4990 0.49 -0.1
91,014 - GFF4990 0.49 +0.8
91,254 + -1.1
91,254 + +0.4
91,268 + +0.7
91,268 + -0.5
91,268 + -0.4
91,269 - +0.8
91,292 - -0.2
91,489 - GFF4991 0.33 -0.0
91,906 + -0.1
91,906 + +0.7
91,906 + -0.1
91,906 + -0.3
91,906 + -0.6
91,906 + +0.1
91,907 - -0.7
91,907 - -0.6
91,907 - +0.5
91,907 - -1.9
91,907 - -1.1
91,907 - -0.2
91,907 - +2.1
92,078 + GFF4992 0.19 -0.3
92,078 + GFF4992 0.19 -0.3
92,078 + GFF4992 0.19 +1.7
92,078 + GFF4992 0.19 -1.2
92,078 + GFF4992 0.19 -0.7
92,078 + GFF4992 0.19 +0.1
92,079 - GFF4992 0.19 -1.3
92,079 - GFF4992 0.19 +0.4
92,079 - GFF4992 0.19 -2.1
92,079 - GFF4992 0.19 -1.2
92,079 - GFF4992 0.19 +0.4
92,079 - GFF4992 0.19 +0.5
92,079 - GFF4992 0.19 -0.4
92,079 - GFF4992 0.19 -0.2
92,079 - GFF4992 0.19 -0.7
92,079 - GFF4992 0.19 +0.6
92,079 - GFF4992 0.19 +0.6
92,079 - GFF4992 0.19 +0.2
92,079 - GFF4992 0.19 -1.1
92,079 - GFF4992 0.19 -0.4
92,079 - GFF4992 0.19 -0.4
92,081 + GFF4992 0.19 -0.3
92,081 + GFF4992 0.19 -0.5
92,081 + GFF4992 0.19 -1.0
92,081 + GFF4992 0.19 +0.7
92,081 + GFF4992 0.19 -0.6
92,081 + GFF4992 0.19 -1.5
92,081 + GFF4992 0.19 -0.6
92,081 + GFF4992 0.19 +0.2
92,081 + GFF4992 0.19 +0.7
92,081 + GFF4992 0.19 -0.3
92,081 + GFF4992 0.19 -0.5
92,081 + GFF4992 0.19 -0.0
92,081 + GFF4992 0.19 -0.1
92,081 + GFF4992 0.19 -0.1
92,081 + GFF4992 0.19 -1.0
92,081 + GFF4992 0.19 -1.2
92,081 + GFF4992 0.19 +0.4
92,082 - GFF4992 0.19 +0.2
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 +0.3
92,082 - GFF4992 0.19 -1.1
92,082 - GFF4992 0.19 -0.5
92,082 - GFF4992 0.19 +0.7
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -0.3
92,082 - GFF4992 0.19 -1.5
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -0.4
92,082 - GFF4992 0.19 -0.6
92,082 - GFF4992 0.19 -0.0
92,082 - GFF4992 0.19 +0.7
92,082 - GFF4992 0.19 -0.1
92,082 - GFF4992 0.19 -0.7
92,082 - GFF4992 0.19 +1.1
92,087 + GFF4992 0.20 -0.6
92,088 - GFF4992 0.20 -0.9
92,120 + GFF4992 0.24 -2.3
92,120 + GFF4992 0.24 -2.5
92,120 + GFF4992 0.24 -0.3
92,120 + GFF4992 0.24 +0.5
92,120 + GFF4992 0.24 -0.6
92,120 + GFF4992 0.24 -1.0
92,120 + GFF4992 0.24 -0.0
92,121 - GFF4992 0.25 -0.7
92,121 - GFF4992 0.25 +2.4
92,121 - GFF4992 0.25 -0.9
92,121 - GFF4992 0.25 -0.4
92,129 + GFF4992 0.26 -1.1
92,129 + GFF4992 0.26 -0.4
92,130 - GFF4992 0.26 -0.3
92,130 - GFF4992 0.26 -1.4
92,130 - GFF4992 0.26 -0.4
92,130 - GFF4992 0.26 -0.1
92,130 - GFF4992 0.26 +0.3
92,243 + GFF4992 0.41 -0.5
92,243 + GFF4992 0.41 -2.3
92,244 - GFF4992 0.41 -0.5
92,244 - GFF4992 0.41 -0.1
92,244 - GFF4992 0.41 +0.9
92,426 + GFF4992 0.67 -2.8
92,426 + GFF4992 0.67 +1.7
92,426 + GFF4992 0.67 -0.3
92,426 + GFF4992 0.67 -0.7
92,426 + GFF4992 0.67 -0.5
92,426 + GFF4992 0.67 +0.6
92,427 - GFF4992 0.67 -1.1
92,427 - GFF4992 0.67 -0.2
92,427 - GFF4992 0.67 -1.1
92,427 - GFF4992 0.67 -0.6
92,427 - GFF4992 0.67 +1.0
92,427 - GFF4992 0.67 -0.3
92,438 + GFF4992 0.68 -1.1
92,438 + GFF4992 0.68 -0.6
92,438 + GFF4992 0.68 -0.2
92,438 + GFF4992 0.68 -0.9
92,438 + GFF4992 0.68 +0.0
92,438 + GFF4992 0.68 +0.5
92,438 + GFF4992 0.68 -1.5
92,438 + GFF4992 0.68 +0.2
92,439 - GFF4992 0.68 -1.3
92,439 - GFF4992 0.68 -2.3
92,439 - GFF4992 0.68 -0.9
92,439 - GFF4992 0.68 -0.3
92,439 - GFF4992 0.68 -1.2
92,439 - GFF4992 0.68 -0.3
92,439 - GFF4992 0.68 +0.4
92,439 - GFF4992 0.68 +0.4
92,444 + GFF4992 0.69 -0.6
92,444 + GFF4992 0.69 -0.3
92,444 + GFF4992 0.69 -0.1
92,444 + GFF4992 0.69 -0.0
92,444 + GFF4992 0.69 +0.1
92,444 + GFF4992 0.69 -0.9
92,444 + GFF4992 0.69 -2.8
92,444 + GFF4992 0.69 +0.8
92,444 + GFF4992 0.69 -1.1
92,444 + GFF4992 0.69 -0.5
92,445 - GFF4992 0.69 +0.1
92,445 - GFF4992 0.69 -1.5
92,445 - GFF4992 0.69 -1.3
92,445 - GFF4992 0.69 +0.1
92,445 - GFF4992 0.69 -0.9
92,445 - GFF4992 0.69 +0.4
92,445 - GFF4992 0.69 +0.4
92,445 - GFF4992 0.69 -1.2
92,445 - GFF4992 0.69 -0.6
92,537 + GFF4992 0.82 -0.8
92,538 - GFF4992 0.82 -0.5
92,538 - GFF4992 0.82 -0.2
92,586 - GFF4992 0.89 +0.1
92,656 + +0.0
92,657 - -0.6
92,666 + -0.5
92,666 + -0.5
92,666 + +0.9
92,667 - -0.4
92,763 - GFF4993 0.10 +0.1
92,763 - GFF4993 0.10 -0.3
92,763 - GFF4993 0.10 -0.2
92,763 - GFF4993 0.10 +0.5
92,780 + GFF4993 0.12 -0.3

Or see this region's nucleotide sequence