Strain Fitness in Variovorax sp. SCN45 around GFF4400

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
33,217	+		GFF4398	0.64	+1.2
33,217	+		GFF4398	0.64	-0.7
33,217	+		GFF4398	0.64	-2.5
33,217	+		GFF4398	0.64	+2.1
33,217	+		GFF4398	0.64	-0.8
33,217	+		GFF4398	0.64	+1.2
33,217	+		GFF4398	0.64	-0.1
33,217	+		GFF4398	0.64	-0.2
33,217	+		GFF4398	0.64	-1.1
33,217	+		GFF4398	0.64	-0.1
33,217	+		GFF4398	0.64	+0.1
33,217	+		GFF4398	0.64	+0.9
33,217	+		GFF4398	0.64	-0.4
33,217	+		GFF4398	0.64	-0.2
33,217	+		GFF4398	0.64	+0.4
33,218	-		GFF4398	0.64	-0.3
33,218	-		GFF4398	0.64	-0.9
33,218	-		GFF4398	0.64	-1.3
33,218	-		GFF4398	0.64	+0.2
33,218	-		GFF4398	0.64	-0.4
33,218	-		GFF4398	0.64	+0.5
33,218	-		GFF4398	0.64	-1.5
33,218	-		GFF4398	0.64	-1.8
33,218	-		GFF4398	0.64	-1.5
33,218	-		GFF4398	0.64	-0.0
33,218	-		GFF4398	0.64	+0.4
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	-0.1
33,218	-		GFF4398	0.64	+3.4
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	+1.6
33,218	-		GFF4398	0.64	-2.3
33,218	-		GFF4398	0.64	+1.6
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	+0.1
33,218	-		GFF4398	0.64	+0.6
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	-0.4
33,237	-		GFF4398	0.67	-0.4
33,498	+				-0.4
33,523	+				-0.5
33,523	+				-0.5
33,523	+				-0.1
33,523	+				+0.4
33,523	+				-1.4
33,523	+				-0.4
33,523	+				+0.1
33,523	+				-1.4
33,523	+				-0.9
33,523	+				-0.3
33,523	+				-0.9
33,523	+				-0.6
33,523	+				+1.1
33,523	+				+0.1
33,523	+				-1.1
33,523	+				+0.6
33,523	+				+0.6
33,523	+				-0.3
33,523	+				-0.2
33,523	+				-0.8
33,524	-				-0.5
33,524	-				-0.7
33,524	-				-1.1
33,524	-				+0.2
33,524	-				-0.5
33,524	-				-0.4
33,524	-				+0.7
33,524	-				-1.8
33,524	-				-0.5
33,524	-				+1.3
33,524	-				-0.9
33,524	-				+0.3
33,524	-				-0.7
33,527	+				+0.3
33,527	+				+1.6
33,527	+				-0.1
33,527	+				+0.5
33,527	+				+0.2
33,527	+				-1.1
33,527	+				+0.2
33,527	+				-1.0
33,527	+				-0.2
33,527	+				-0.3
33,527	+				-1.1
33,527	+				+1.0
33,527	+				+0.4
33,527	+				+0.1
33,527	+				-0.8
33,527	+				-0.3
33,527	+				+0.1
33,527	+				-0.9
33,527	+				-0.4
33,527	+				-0.3
33,527	+				+0.4
33,527	+				-0.2
33,527	+				+0.2
33,527	+				-0.1
33,527	+				-0.3
33,527	+				-0.6
33,527	+				+0.6
33,528	-				-0.3
33,528	-				+0.6
33,528	-				-0.9
33,528	-				+0.6
33,528	-				+0.7
33,528	-				-1.6
33,528	-				-0.2
33,528	-				-0.7
33,528	-				-0.1
33,528	-				+0.8
33,528	-				-0.3
33,528	-				-1.4
33,528	-				+0.1
33,528	-				+1.1
33,528	-				-0.2
33,528	-				-0.6
33,528	-				-0.7
33,528	-				+1.2
33,528	-				-1.0
33,528	-				-0.2
33,528	-				-0.5
33,528	-				-0.3
33,528	-				-0.5
33,528	-				+0.5
33,528	-				+0.4
33,685	+		GFF4399	0.29	+0.4
33,685	+		GFF4399	0.29	-0.3
33,685	+		GFF4399	0.29	+0.2
33,685	+		GFF4399	0.29	+0.4
33,685	+		GFF4399	0.29	-0.1
33,685	+		GFF4399	0.29	+0.6
33,685	+		GFF4399	0.29	+0.8
33,685	+		GFF4399	0.29	-0.3
33,685	+		GFF4399	0.29	-1.0
33,685	+		GFF4399	0.29	-0.4
33,685	+		GFF4399	0.29	-1.2
33,685	+		GFF4399	0.29	-0.5
33,685	+		GFF4399	0.29	+0.7
33,685	+		GFF4399	0.29	-0.9
33,685	+		GFF4399	0.29	+0.3
33,685	+		GFF4399	0.29	-0.1
33,685	+		GFF4399	0.29	-0.1
33,686	-		GFF4399	0.29	-0.6
33,686	-		GFF4399	0.29	-0.1
33,686	-		GFF4399	0.29	-1.6
33,686	-		GFF4399	0.29	+0.3
33,686	-		GFF4399	0.29	-0.0
33,686	-		GFF4399	0.29	+1.2
33,686	-		GFF4399	0.29	-2.4
33,686	-		GFF4399	0.29	+0.6
33,686	-		GFF4399	0.29	+0.5
33,686	-		GFF4399	0.29	+3.4
33,686	-		GFF4399	0.29	-1.4
33,686	-		GFF4399	0.29	+0.9
33,686	-		GFF4399	0.29	+0.2
33,686	-		GFF4399	0.29	-0.1
33,686	-		GFF4399	0.29	+0.4
33,686	-		GFF4399	0.29	+0.0
33,686	-		GFF4399	0.29	+0.2
33,686	-		GFF4399	0.29	-0.8
33,686	-		GFF4399	0.29	+0.2
33,688	+		GFF4399	0.30	-0.3
33,688	+		GFF4399	0.30	-1.4
33,688	+		GFF4399	0.30	+1.3
33,688	+		GFF4399	0.30	-0.4
33,688	+		GFF4399	0.30	-0.6
33,688	+		GFF4399	0.30	-1.3
33,688	+		GFF4399	0.30	-0.2
33,688	+		GFF4399	0.30	+0.3
33,688	+		GFF4399	0.30	+1.2
33,688	+		GFF4399	0.30	+0.8
33,688	+		GFF4399	0.30	-0.2
33,688	+		GFF4399	0.30	-0.4
33,688	+		GFF4399	0.30	+0.5
33,688	+		GFF4399	0.30	+0.5
33,688	+		GFF4399	0.30	+0.1
33,688	+		GFF4399	0.30	+0.6
33,688	+		GFF4399	0.30	-1.0
33,688	+		GFF4399	0.30	+0.3
33,688	+		GFF4399	0.30	+0.9
33,688	+		GFF4399	0.30	-0.5
33,688	+		GFF4399	0.30	+0.1
33,688	+		GFF4399	0.30	-1.5
33,688	+		GFF4399	0.30	-0.0
33,688	+		GFF4399	0.30	+0.4
33,688	+		GFF4399	0.30	-0.5
33,688	+		GFF4399	0.30	+0.8
33,688	+		GFF4399	0.30	-1.8
33,688	+		GFF4399	0.30	+0.6
33,688	+		GFF4399	0.30	+0.4
33,689	-		GFF4399	0.30	+0.5
33,689	-		GFF4399	0.30	+0.5
33,689	-		GFF4399	0.30	+0.9
33,689	-		GFF4399	0.30	-0.6
33,689	-		GFF4399	0.30	-0.1
33,689	-		GFF4399	0.30	+1.9
33,689	-		GFF4399	0.30	-1.3
33,689	-		GFF4399	0.30	-0.5
33,689	-		GFF4399	0.30	+0.2
33,689	-		GFF4399	0.30	+0.1
33,689	-		GFF4399	0.30	+2.6
33,689	-		GFF4399	0.30	-0.4
33,689	-		GFF4399	0.30	+1.3
33,689	-		GFF4399	0.30	-0.4
33,689	-		GFF4399	0.30	-0.5
33,689	-		GFF4399	0.30	+0.1
33,689	-		GFF4399	0.30	+0.2
33,689	-		GFF4399	0.30	-0.1
33,689	-		GFF4399	0.30	-2.7
33,689	-		GFF4399	0.30	+0.6
33,689	-		GFF4399	0.30	-0.5
33,689	-		GFF4399	0.30	-0.1
33,689	-		GFF4399	0.30	-0.7
33,689	-		GFF4399	0.30	-1.1
33,689	-		GFF4399	0.30	+0.6
33,689	-		GFF4399	0.30	-1.2
33,689	-		GFF4399	0.30	+0.0
33,689	-		GFF4399	0.30	+1.1
33,689	-		GFF4399	0.30	+0.3
33,689	-		GFF4399	0.30	-1.2
33,990	+		GFF4399	0.79	-0.2
33,990	+		GFF4399	0.79	-0.9
33,991	-		GFF4399	0.79	-0.4
34,120	+				+0.5
34,120	+				-0.5
34,120	+				+0.6
34,120	+				-0.6
34,121	-				-0.4
34,121	-				-0.7
34,121	-				-1.4
34,121	-				-3.4
34,121	-				-0.1
34,447	+		GFF4400	0.67	-0.8
34,514	+		GFF4400	0.83	-0.8
34,514	+		GFF4400	0.83	-0.1
34,514	+		GFF4400	0.83	-0.1
34,514	+		GFF4400	0.83	+0.4
34,514	+		GFF4400	0.83	+1.1
34,514	+		GFF4400	0.83	+0.0
34,514	+		GFF4400	0.83	-1.7
34,514	+		GFF4400	0.83	+0.8
34,515	-		GFF4400	0.83	-1.9
34,515	-		GFF4400	0.83	-0.2
34,515	-		GFF4400	0.83	-0.1
34,515	-		GFF4400	0.83	-1.4
34,515	-		GFF4400	0.83	-0.2
34,515	-		GFF4400	0.83	-0.2
34,515	-		GFF4400	0.83	-0.1
34,515	-		GFF4400	0.83	-1.6
34,515	-		GFF4400	0.83	-0.7
34,515	-		GFF4400	0.83	+0.2
34,515	-		GFF4400	0.83	+0.3
34,515	-		GFF4400	0.83	-2.7
34,515	-		GFF4400	0.83	-0.6
34,515	-		GFF4400	0.83	-0.9
34,515	-		GFF4400	0.83	-1.1
34,515	-		GFF4400	0.83	-0.4
34,567	+				-0.3
34,567	+				-0.5
34,567	+				-0.4
34,567	+				-0.0
34,567	+				-0.4
34,567	+				+0.1
34,567	+				+0.1
34,567	+				+0.0
34,567	+				-3.2
34,567	+				-1.2
34,567	+				-0.3
34,567	+				-0.4
34,567	+				+0.4
34,567	+				+0.6
34,567	+				+0.6
34,567	+				-1.4
34,567	+				+0.9
34,567	+				-0.4
34,567	+				+0.0
34,567	+				-0.3
34,567	+				+0.1
34,567	+				-0.1
34,567	+				-0.7
34,567	+				-0.2
34,567	+				-1.0
34,567	+				+2.3
34,567	+				-0.5
34,567	+				-0.8
34,567	+				-0.3
34,567	+				+1.1
34,567	+				+0.2
34,567	+				-2.4
34,567	+				-1.2
34,568	-				+1.0
34,568	-				-1.4
34,568	-				-0.6
34,568	-				+0.2
34,568	-				-1.2
34,568	-				-0.0
34,568	-				+1.6
34,568	-				-1.3
34,568	-				-0.6
34,568	-				-0.4
34,568	-				+0.8
34,568	-				-0.2
34,568	-				+0.3
34,568	-				-0.0
34,568	-				+0.4
34,568	-				+0.4
34,568	-				-0.5
34,568	-				+0.6
34,568	-				-0.3
34,568	-				+0.8
34,568	-				+1.1
34,568	-				+0.6
34,568	-				-0.2
34,568	-				+1.6
34,568	-				+0.1
34,568	-				+1.2
34,582	+				+0.1
34,582	+				+0.4
34,582	+				-0.3
34,582	+				+1.3
34,582	+				-0.2
34,582	+				+0.3
34,582	+				-2.2
34,582	+				-0.9
34,583	-				+0.5
34,583	-				-0.5
34,583	-				+0.2
34,583	-				+1.2
34,583	-				-1.4
34,583	-				+0.1
34,583	-				+0.4
34,583	-				+0.5
34,583	-				-0.1
34,591	+				-0.1
34,592	-				-0.6
34,597	+				-0.1
34,597	+				+1.4
34,597	+				+0.4
34,597	+				+0.4
34,597	+				-0.7
34,598	-				-0.1
34,598	-				-0.6
34,598	-				+0.3
34,598	-				+0.6
34,598	-				-0.3
34,598	-				-0.4
34,598	-				+1.4
34,611	+				+0.3
34,611	+				-0.9
34,611	+				+1.2
34,612	-				-0.4
34,612	-				-0.4
34,711	+		GFF4401	0.26	-0.4
34,711	+		GFF4401	0.26	+0.3
34,711	+		GFF4401	0.26	+0.0
34,711	+		GFF4401	0.26	+1.2
34,711	+		GFF4401	0.26	-1.4
34,711	+		GFF4401	0.26	+0.9
34,711	+		GFF4401	0.26	-0.1
34,711	+		GFF4401	0.26	+1.8
34,711	+		GFF4401	0.26	-0.2
34,711	+		GFF4401	0.26	-0.3
34,711	+		GFF4401	0.26	+0.3
34,712	-		GFF4401	0.26	-2.3
34,712	-		GFF4401	0.26	-0.2
34,712	-		GFF4401	0.26	+0.6
34,712	-		GFF4401	0.26	-0.4
34,712	-		GFF4401	0.26	-0.5
34,712	-		GFF4401	0.26	+0.0
34,712	-		GFF4401	0.26	-0.3
34,712	-		GFF4401	0.26	-1.2
34,712	-		GFF4401	0.26	-1.0
34,712	-		GFF4401	0.26	-0.3
34,776	+		GFF4401	0.55	-0.3
34,776	+		GFF4401	0.55	-0.8
34,776	+		GFF4401	0.55	-0.8
34,776	+		GFF4401	0.55	-2.2
34,776	+		GFF4401	0.55	+0.1
34,776	+		GFF4401	0.55	-0.4
34,777	-		GFF4401	0.56	-0.6
34,777	-		GFF4401	0.56	-0.7
34,799	+		GFF4401	0.66	-0.9
34,799	+		GFF4401	0.66	-1.2
34,799	+		GFF4401	0.66	+0.1
34,799	+		GFF4401	0.66	-0.2
34,799	+		GFF4401	0.66	+0.8
34,799	+		GFF4401	0.66	+0.3
34,799	+		GFF4401	0.66	+0.1
34,799	+		GFF4401	0.66	-0.3
34,799	+		GFF4401	0.66	-0.4
34,799	+		GFF4401	0.66	+0.1
34,799	+		GFF4401	0.66	-0.5
34,799	+		GFF4401	0.66	+0.6
34,799	+		GFF4401	0.66	+0.2
34,799	+		GFF4401	0.66	-1.0
34,799	+		GFF4401	0.66	-0.6
34,799	+		GFF4401	0.66	+0.2
34,800	-		GFF4401	0.66	-0.6
34,800	-		GFF4401	0.66	-0.4
34,800	-		GFF4401	0.66	-0.1
34,800	-		GFF4401	0.66	-0.1
34,800	-		GFF4401	0.66	+0.1
34,800	-		GFF4401	0.66	+1.6
34,800	-		GFF4401	0.66	-0.1
34,800	-		GFF4401	0.66	-1.2
34,800	-		GFF4401	0.66	+2.4
34,800	-		GFF4401	0.66	-0.4
34,800	-		GFF4401	0.66	-1.1
34,800	-		GFF4401	0.66	-0.4
34,800	-		GFF4401	0.66	-0.9
34,800	-		GFF4401	0.66	+2.6
34,800	-		GFF4401	0.66	-0.4
34,800	-		GFF4401	0.66	+0.3
34,800	-		GFF4401	0.66	-0.1
34,800	-		GFF4401	0.66	-0.2
34,832	+		GFF4401	0.81	-0.7
34,832	+		GFF4401	0.81	+0.6
34,832	+		GFF4401	0.81	-0.2
34,832	+		GFF4401	0.81	-1.0
34,832	+		GFF4401	0.81	+0.3
34,832	+		GFF4401	0.81	+0.1
34,832	+		GFF4401	0.81	-0.2
34,832	+		GFF4401	0.81	+1.6
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	+0.2
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	+0.3
34,832	+		GFF4401	0.81	-0.8
34,832	+		GFF4401	0.81	+1.2
34,832	+		GFF4401	0.81	+1.1
34,832	+		GFF4401	0.81	+0.6
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-1.2
34,832	+		GFF4401	0.81	+1.0
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-1.1
34,832	+		GFF4401	0.81	-0.3
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-0.2
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