Strain Fitness in Variovorax sp. SCN45 around GFF4241

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4240 and GFF4241 overlap by 1 nucleotidesGFF4241 and GFF4242 overlap by 4 nucleotides GFF4240 - Integral membrane protein, at 151,154 to 152,875 GFF4240 GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901 GFF4241 GFF4242 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 155,898 to 156,944 GFF4242 Position (kb) 152 153 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.933 kb on - strand, within GFF4240at 151.933 kb on - strand, within GFF4240at 152.442 kb on + strand, within GFF4240at 152.443 kb on - strand, within GFF4240at 152.478 kb on + strand, within GFF4240at 152.479 kb on - strand, within GFF4240at 152.523 kb on + strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.602 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.742 kb on + strandat 152.743 kb on - strandat 152.743 kb on - strandat 152.808 kb on + strandat 152.808 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.943 kb on - strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.147 kb on - strandat 153.147 kb on - strandat 153.716 kb on + strand, within GFF4241at 153.717 kb on - strand, within GFF4241at 153.717 kb on - strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.831 kb on - strand, within GFF4241at 154.172 kb on + strand, within GFF4241at 154.173 kb on - strand, within GFF4241at 154.420 kb on - strand, within GFF4241at 154.420 kb on - strand, within GFF4241at 154.420 kb on - strand, within GFF4241at 154.420 kb on - strand, within GFF4241at 154.604 kb on + strand, within GFF4241at 154.604 kb on + strand, within GFF4241at 154.605 kb on - strand, within GFF4241at 154.692 kb on - strand, within GFF4241at 155.861 kb on + strandat 155.861 kb on + strandat 155.862 kb on - strandat 155.862 kb on - strandat 156.268 kb on + strand, within GFF4242at 156.268 kb on + strand, within GFF4242at 156.268 kb on + strand, within GFF4242at 156.268 kb on + strand, within GFF4242at 156.268 kb on + strand, within GFF4242at 156.269 kb on - strand, within GFF4242at 156.269 kb on - strand, within GFF4242at 156.269 kb on - strand, within GFF4242at 156.269 kb on - strand, within GFF4242at 156.269 kb on - strand, within GFF4242at 156.383 kb on - strand, within GFF4242at 156.383 kb on - strand, within GFF4242at 156.383 kb on - strand, within GFF4242at 156.383 kb on - strand, within GFF4242at 156.508 kb on + strand, within GFF4242at 156.509 kb on - strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.514 kb on + strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.515 kb on - strand, within GFF4242at 156.539 kb on - strand, within GFF4242at 156.566 kb on - strand, within GFF4242at 156.566 kb on - strand, within GFF4242at 156.649 kb on + strand, within GFF4242at 156.770 kb on - strand, within GFF4242at 156.829 kb on + strand, within GFF4242at 156.829 kb on + strand, within GFF4242at 156.830 kb on - strand, within GFF4242at 156.830 kb on - strand, within GFF4242at 156.830 kb on - strand, within GFF4242at 156.830 kb on - strand, within GFF4242

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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151,932 + GFF4240 0.45 +0.9
151,932 + GFF4240 0.45 -1.0
151,932 + GFF4240 0.45 +1.0
151,932 + GFF4240 0.45 +0.2
151,933 - GFF4240 0.45 +0.0
151,933 - GFF4240 0.45 -0.6
152,442 + GFF4240 0.75 +0.8
152,443 - GFF4240 0.75 -0.3
152,478 + GFF4240 0.77 -0.6
152,479 - GFF4240 0.77 +0.9
152,523 + GFF4240 0.80 +0.3
152,524 - GFF4240 0.80 +0.3
152,524 - GFF4240 0.80 -0.4
152,524 - GFF4240 0.80 -1.1
152,524 - GFF4240 0.80 +1.0
152,602 + GFF4240 0.84 +0.1
152,634 + GFF4240 0.86 -1.5
152,634 + GFF4240 0.86 -1.2
152,634 + GFF4240 0.86 -1.4
152,635 - GFF4240 0.86 +1.0
152,635 - GFF4240 0.86 -0.8
152,635 - GFF4240 0.86 -1.1
152,742 + +1.0
152,743 - +0.2
152,743 - +0.7
152,808 + +0.4
152,808 + -1.1
152,909 + +1.2
152,909 + -1.6
152,909 + +0.1
152,909 + +1.4
152,910 - -0.5
152,910 - +0.0
152,910 - +0.2
152,910 - -0.7
152,910 - +0.1
152,910 - -0.2
152,910 - +1.0
152,910 - +0.0
152,943 - -0.2
153,146 + -0.9
153,146 + -1.4
153,146 + +0.2
153,146 + -1.5
153,147 - +0.3
153,147 - -0.0
153,716 + GFF4241 0.28 -0.0
153,717 - GFF4241 0.28 -1.0
153,717 - GFF4241 0.28 -0.7
153,719 + GFF4241 0.28 -0.7
153,719 + GFF4241 0.28 +1.6
153,719 + GFF4241 0.28 +0.3
153,719 + GFF4241 0.28 -0.6
153,719 + GFF4241 0.28 +0.9
153,719 + GFF4241 0.28 +0.0
153,719 + GFF4241 0.28 +1.0
153,719 + GFF4241 0.28 -0.1
153,719 + GFF4241 0.28 +1.9
153,719 + GFF4241 0.28 +1.3
153,720 - GFF4241 0.28 -0.9
153,720 - GFF4241 0.28 -0.3
153,720 - GFF4241 0.28 +0.8
153,720 - GFF4241 0.28 +0.5
153,720 - GFF4241 0.28 -0.4
153,720 - GFF4241 0.28 -0.7
153,831 - GFF4241 0.32 +1.0
154,172 + GFF4241 0.43 -0.3
154,173 - GFF4241 0.43 -0.0
154,420 - GFF4241 0.51 -0.7
154,420 - GFF4241 0.51 -0.7
154,420 - GFF4241 0.51 +0.9
154,420 - GFF4241 0.51 +0.3
154,604 + GFF4241 0.57 -0.7
154,604 + GFF4241 0.57 +0.0
154,605 - GFF4241 0.57 -0.4
154,692 - GFF4241 0.60 -0.3
155,861 + -2.4
155,861 + -0.9
155,862 - -0.5
155,862 - -0.4
156,268 + GFF4242 0.35 +0.1
156,268 + GFF4242 0.35 +0.0
156,268 + GFF4242 0.35 +0.2
156,268 + GFF4242 0.35 +0.7
156,268 + GFF4242 0.35 -0.4
156,269 - GFF4242 0.35 -0.3
156,269 - GFF4242 0.35 -0.4
156,269 - GFF4242 0.35 +0.5
156,269 - GFF4242 0.35 -0.5
156,269 - GFF4242 0.35 +1.8
156,383 - GFF4242 0.46 +0.0
156,383 - GFF4242 0.46 -1.6
156,383 - GFF4242 0.46 -0.4
156,383 - GFF4242 0.46 +0.8
156,508 + GFF4242 0.58 -1.0
156,509 - GFF4242 0.58 +0.6
156,514 + GFF4242 0.59 +0.5
156,514 + GFF4242 0.59 -0.8
156,514 + GFF4242 0.59 -1.5
156,514 + GFF4242 0.59 -1.4
156,514 + GFF4242 0.59 +0.3
156,514 + GFF4242 0.59 +0.6
156,514 + GFF4242 0.59 -0.7
156,514 + GFF4242 0.59 +0.4
156,514 + GFF4242 0.59 +0.8
156,514 + GFF4242 0.59 +0.3
156,514 + GFF4242 0.59 -1.0
156,514 + GFF4242 0.59 +0.9
156,514 + GFF4242 0.59 -1.7
156,514 + GFF4242 0.59 -0.8
156,514 + GFF4242 0.59 -0.1
156,514 + GFF4242 0.59 -0.4
156,514 + GFF4242 0.59 +0.6
156,514 + GFF4242 0.59 -0.3
156,515 - GFF4242 0.59 +0.4
156,515 - GFF4242 0.59 +0.6
156,515 - GFF4242 0.59 -0.2
156,515 - GFF4242 0.59 +0.0
156,515 - GFF4242 0.59 -0.7
156,515 - GFF4242 0.59 -0.0
156,515 - GFF4242 0.59 -0.6
156,515 - GFF4242 0.59 +0.1
156,515 - GFF4242 0.59 -0.1
156,515 - GFF4242 0.59 -0.7
156,515 - GFF4242 0.59 +1.0
156,515 - GFF4242 0.59 +0.2
156,515 - GFF4242 0.59 -0.8
156,515 - GFF4242 0.59 -1.4
156,515 - GFF4242 0.59 +0.7
156,539 - GFF4242 0.61 -0.1
156,566 - GFF4242 0.64 +0.8
156,566 - GFF4242 0.64 -0.2
156,649 + GFF4242 0.72 -0.2
156,770 - GFF4242 0.83 +0.2
156,829 + GFF4242 0.89 -0.7
156,829 + GFF4242 0.89 -0.3
156,830 - GFF4242 0.89 -0.5
156,830 - GFF4242 0.89 -1.7
156,830 - GFF4242 0.89 +1.4
156,830 - GFF4242 0.89 +0.1

Or see this region's nucleotide sequence