Strain Fitness in Variovorax sp. SCN45 around GFF4231

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4230 and GFF4231 are separated by 36 nucleotidesGFF4231 and GFF4232 are separated by 76 nucleotidesGFF4232 and GFF4233 overlap by 4 nucleotides GFF4230 - Transcriptional regulator of pyridoxine metabolism / Pyridoxamine phosphate aminotransferase (EC 2.6.1.54), at 141,708 to 143,018 GFF4230 GFF4231 - no description, at 143,055 to 144,026 GFF4231 GFF4232 - no description, at 144,103 to 144,657 GFF4232 GFF4233 - no description, at 144,654 to 145,064 GFF4233 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.059 kb on + strand, within GFF4230at 142.060 kb on - strand, within GFF4230at 142.060 kb on - strand, within GFF4230at 142.135 kb on - strand, within GFF4230at 142.441 kb on - strand, within GFF4230at 142.497 kb on + strand, within GFF4230at 142.498 kb on - strand, within GFF4230at 142.540 kb on + strand, within GFF4230at 142.540 kb on + strand, within GFF4230at 142.541 kb on - strand, within GFF4230at 142.541 kb on - strand, within GFF4230at 142.541 kb on - strand, within GFF4230at 142.735 kb on - strand, within GFF4230at 143.356 kb on + strand, within GFF4231at 143.356 kb on + strand, within GFF4231at 143.356 kb on + strand, within GFF4231at 143.356 kb on + strand, within GFF4231at 143.356 kb on + strand, within GFF4231at 143.357 kb on - strand, within GFF4231at 143.357 kb on - strand, within GFF4231at 143.527 kb on + strand, within GFF4231at 143.528 kb on - strand, within GFF4231at 143.774 kb on - strand, within GFF4231at 143.774 kb on - strand, within GFF4231at 144.033 kb on - strandat 144.304 kb on + strand, within GFF4232at 144.304 kb on + strand, within GFF4232at 144.305 kb on - strand, within GFF4232at 144.511 kb on + strand, within GFF4232at 144.511 kb on + strand, within GFF4232at 144.512 kb on - strand, within GFF4232at 144.512 kb on - strand, within GFF4232at 144.720 kb on + strand, within GFF4233at 144.721 kb on - strand, within GFF4233at 144.786 kb on + strand, within GFF4233at 144.817 kb on - strand, within GFF4233

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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142,059 + GFF4230 0.27 +0.2
142,060 - GFF4230 0.27 +0.2
142,060 - GFF4230 0.27 -0.0
142,135 - GFF4230 0.33 +0.2
142,441 - GFF4230 0.56 +0.2
142,497 + GFF4230 0.60 +0.0
142,498 - GFF4230 0.60 -0.2
142,540 + GFF4230 0.63 +0.4
142,540 + GFF4230 0.63 +0.6
142,541 - GFF4230 0.64 +0.4
142,541 - GFF4230 0.64 -0.3
142,541 - GFF4230 0.64 -0.0
142,735 - GFF4230 0.78 -0.1
143,356 + GFF4231 0.31 -1.8
143,356 + GFF4231 0.31 -0.5
143,356 + GFF4231 0.31 +0.0
143,356 + GFF4231 0.31 -2.5
143,356 + GFF4231 0.31 +0.6
143,357 - GFF4231 0.31 +0.4
143,357 - GFF4231 0.31 -1.7
143,527 + GFF4231 0.49 -1.4
143,528 - GFF4231 0.49 -0.4
143,774 - GFF4231 0.74 -0.5
143,774 - GFF4231 0.74 +0.6
144,033 - -0.0
144,304 + GFF4232 0.36 -0.4
144,304 + GFF4232 0.36 +0.5
144,305 - GFF4232 0.36 -0.4
144,511 + GFF4232 0.74 -1.7
144,511 + GFF4232 0.74 +1.0
144,512 - GFF4232 0.74 -0.7
144,512 - GFF4232 0.74 -0.6
144,720 + GFF4233 0.16 +0.4
144,721 - GFF4233 0.16 -1.4
144,786 + GFF4233 0.32 -0.7
144,817 - GFF4233 0.40 -0.4

Or see this region's nucleotide sequence