Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4013 and GFF4014 are separated by 353 nucleotides GFF4014 and GFF4015 are separated by 11 nucleotides GFF4015 and GFF4016 are separated by 140 nucleotides
GFF4013 - hypothetical protein, at 224,054 to 224,677
GFF4013
GFF4014 - Transcriptional regulator, ArsR family, at 225,031 to 225,354
GFF4014
GFF4015 - KEGG: lactoylglutathione lyase , at 225,366 to 225,845
GFF4015
GFF4016 - Arsenate reductase (EC 1.20.4.1), at 225,986 to 226,357
GFF4016
GFF4017 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,350 to 226,859
GFF4017
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.047 kb on + strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.048 kb on - strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.054 kb on - strand at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.177 kb on + strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.178 kb on - strand, within GFF4013 at 224.348 kb on - strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.510 kb on + strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.511 kb on - strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.536 kb on + strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.537 kb on - strand, within GFF4013 at 224.679 kb on - strand at 224.685 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.748 kb on + strand at 224.749 kb on - strand at 224.765 kb on + strand at 224.765 kb on + strand at 224.766 kb on - strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.767 kb on + strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.768 kb on - strand at 224.809 kb on + strand at 224.810 kb on - strand at 224.870 kb on + strand at 224.870 kb on + strand at 224.871 kb on - strand at 224.871 kb on - strand at 224.871 kb on - strand at 224.930 kb on + strand at 224.931 kb on - strand at 224.931 kb on - strand at 224.942 kb on + strand at 224.942 kb on + strand at 224.942 kb on + strand at 224.943 kb on - strand at 224.943 kb on - strand at 224.943 kb on - strand at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.092 kb on + strand, within GFF4014 at 225.093 kb on - strand, within GFF4014 at 225.093 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.169 kb on - strand, within GFF4014 at 225.247 kb on + strand, within GFF4014 at 225.247 kb on + strand, within GFF4014 at 225.248 kb on - strand, within GFF4014 at 225.287 kb on - strand, within GFF4014 at 225.287 kb on - strand, within GFF4014 at 225.424 kb on - strand, within GFF4015 at 225.424 kb on - strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.468 kb on + strand, within GFF4015 at 225.469 kb on - strand, within GFF4015 at 225.736 kb on - strand, within GFF4015 at 225.736 kb on - strand, within GFF4015 at 226.165 kb on - strand, within GFF4016
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 224,047 + +0.3 224,047 + -0.3 224,047 + +1.8 224,047 + -0.4 224,047 + -0.5 224,047 + +0.4 224,047 + -0.1 224,047 + -0.4 224,047 + +0.7 224,048 - -0.0 224,048 - -0.0 224,048 - +2.0 224,048 - +0.4 224,048 - +0.3 224,048 - +0.7 224,048 - -0.0 224,048 - +0.5 224,053 + -0.5 224,053 + -0.8 224,053 + +0.2 224,053 + +0.2 224,053 + +0.9 224,053 + +0.6 224,053 + +0.5 224,053 + +0.1 224,053 + -2.0 224,053 + -0.6 224,053 + -0.5 224,053 + +1.0 224,054 - -1.9 224,054 - +2.3 224,054 - +1.3 224,054 - -0.8 224,054 - +0.6 224,054 - -2.9 224,054 - +0.3 224,054 - +0.9 224,054 - -0.5 224,054 - -1.1 224,177 + GFF4013 0.20 -0.1 224,177 + GFF4013 0.20 -0.5 224,177 + GFF4013 0.20 +0.6 224,177 + GFF4013 0.20 -1.6 224,177 + GFF4013 0.20 -0.7 224,177 + GFF4013 0.20 +0.5 224,177 + GFF4013 0.20 +0.0 224,177 + GFF4013 0.20 -0.9 224,178 - GFF4013 0.20 -0.7 224,178 - GFF4013 0.20 +0.2 224,178 - GFF4013 0.20 -0.5 224,178 - GFF4013 0.20 -3.0 224,178 - GFF4013 0.20 -0.5 224,178 - GFF4013 0.20 -1.0 224,348 - GFF4013 0.47 -0.1 224,510 + GFF4013 0.73 +0.1 224,510 + GFF4013 0.73 -0.8 224,510 + GFF4013 0.73 +1.2 224,510 + GFF4013 0.73 +0.0 224,510 + GFF4013 0.73 +1.0 224,510 + GFF4013 0.73 +1.3 224,510 + GFF4013 0.73 -0.2 224,511 - GFF4013 0.73 -1.0 224,511 - GFF4013 0.73 +0.9 224,511 - GFF4013 0.73 -1.3 224,511 - GFF4013 0.73 -1.6 224,511 - GFF4013 0.73 -0.0 224,536 + GFF4013 0.77 +0.1 224,536 + GFF4013 0.77 +1.0 224,536 + GFF4013 0.77 -1.4 224,536 + GFF4013 0.77 -0.2 224,536 + GFF4013 0.77 +0.7 224,536 + GFF4013 0.77 -0.6 224,536 + GFF4013 0.77 -1.2 224,537 - GFF4013 0.77 +2.2 224,537 - GFF4013 0.77 -1.1 224,537 - GFF4013 0.77 +0.0 224,537 - GFF4013 0.77 -0.9 224,537 - GFF4013 0.77 -1.8 224,537 - GFF4013 0.77 +0.8 224,537 - GFF4013 0.77 -0.0 224,537 - GFF4013 0.77 -2.3 224,537 - GFF4013 0.77 -0.4 224,679 - -1.3 224,685 + -0.6 224,748 + +1.2 224,748 + +0.2 224,748 + -0.5 224,748 + +0.0 224,748 + -0.2 224,749 - +0.1 224,765 + +0.2 224,765 + -0.1 224,766 - -0.9 224,767 + -0.8 224,767 + -0.3 224,767 + +0.5 224,767 + -0.3 224,767 + -0.4 224,767 + +0.7 224,767 + -0.5 224,767 + -1.3 224,767 + -0.3 224,767 + +0.7 224,767 + +0.5 224,767 + -0.3 224,767 + -0.2 224,767 + -1.0 224,768 - +0.5 224,768 - -3.2 224,768 - -0.2 224,768 - +0.3 224,768 - +0.1 224,768 - +0.1 224,768 - +1.5 224,768 - +0.1 224,809 + -1.0 224,810 - -0.6 224,870 + +0.5 224,870 + -0.1 224,871 - -0.5 224,871 - +0.1 224,871 - -0.8 224,930 + +0.4 224,931 - -0.8 224,931 - -0.3 224,942 + -0.8 224,942 + -0.5 224,942 + -0.3 224,943 - +0.1 224,943 - -0.6 224,943 - -0.5 225,092 + GFF4014 0.19 +0.6 225,092 + GFF4014 0.19 +1.8 225,092 + GFF4014 0.19 +2.5 225,092 + GFF4014 0.19 -0.6 225,093 - GFF4014 0.19 -1.0 225,093 - GFF4014 0.19 +0.4 225,169 - GFF4014 0.43 -0.1 225,169 - GFF4014 0.43 -0.0 225,169 - GFF4014 0.43 +1.5 225,247 + GFF4014 0.67 -0.9 225,247 + GFF4014 0.67 +1.1 225,248 - GFF4014 0.67 -0.0 225,287 - GFF4014 0.79 +1.1 225,287 - GFF4014 0.79 -0.9 225,424 - GFF4015 0.12 +0.0 225,424 - GFF4015 0.12 +1.0 225,468 + GFF4015 0.21 -0.5 225,468 + GFF4015 0.21 +0.9 225,468 + GFF4015 0.21 -0.2 225,469 - GFF4015 0.21 +1.5 225,736 - GFF4015 0.77 -0.8 225,736 - GFF4015 0.77 +0.4 226,165 - GFF4016 0.48 +1.5
Or see this region's nucleotide sequence