Strain Fitness in Variovorax sp. SCN45 around GFF398

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF397 and GFF398 are separated by 13 nucleotidesGFF398 and GFF399 are separated by 59 nucleotides GFF397 - NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136), at 428,919 to 430,379 GFF397 GFF398 - Putative oxidoreductase, at 430,393 to 431,157 GFF398 GFF399 - 3'-to-5' exoribonuclease RNase R, at 431,217 to 433,538 GFF399 Position (kb) 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.643 kb on - strand, within GFF397at 430.270 kb on + strandat 430.270 kb on + strandat 430.270 kb on + strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.395 kb on - strandat 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.546 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.620 kb on - strand, within GFF398at 430.620 kb on - strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 431.200 kb on + strandat 431.201 kb on - strandat 431.201 kb on - strandat 431.537 kb on - strand, within GFF399at 431.594 kb on - strand, within GFF399at 431.594 kb on - strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.635 kb on + strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.636 kb on - strand, within GFF399at 431.695 kb on + strand, within GFF399at 431.695 kb on + strand, within GFF399at 431.695 kb on + strand, within GFF399at 431.696 kb on - strand, within GFF399at 431.696 kb on - strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.722 kb on + strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 431.723 kb on - strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.025 kb on + strand, within GFF399at 432.026 kb on - strand, within GFF399at 432.026 kb on - strand, within GFF399at 432.026 kb on - strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.034 kb on + strand, within GFF399at 432.035 kb on - strand, within GFF399at 432.035 kb on - strand, within GFF399at 432.035 kb on - strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.070 kb on + strand, within GFF399at 432.071 kb on - strand, within GFF399at 432.071 kb on - strand, within GFF399at 432.071 kb on - strand, within GFF399at 432.071 kb on - strand, within GFF399at 432.071 kb on - strand, within GFF399at 432.071 kb on - strand, within GFF399

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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429,533 + GFF397 0.42 -1.3
429,533 + GFF397 0.42 +0.9
429,533 + GFF397 0.42 +1.3
429,533 + GFF397 0.42 -1.0
429,533 + GFF397 0.42 -0.2
429,533 + GFF397 0.42 +0.3
429,533 + GFF397 0.42 -0.8
429,533 + GFF397 0.42 -1.0
429,533 + GFF397 0.42 +0.5
429,533 + GFF397 0.42 -0.3
429,533 + GFF397 0.42 -0.7
429,533 + GFF397 0.42 -0.5
429,533 + GFF397 0.42 +0.5
429,533 + GFF397 0.42 -0.1
429,533 + GFF397 0.42 -0.7
429,533 + GFF397 0.42 +0.0
429,533 + GFF397 0.42 +1.3
429,533 + GFF397 0.42 +2.3
429,533 + GFF397 0.42 -1.9
429,533 + GFF397 0.42 -0.7
429,533 + GFF397 0.42 -1.5
429,533 + GFF397 0.42 +0.1
429,533 + GFF397 0.42 -0.2
429,533 + GFF397 0.42 -1.0
429,533 + GFF397 0.42 -1.5
429,533 + GFF397 0.42 -0.7
429,533 + GFF397 0.42 -0.3
429,533 + GFF397 0.42 -0.6
429,533 + GFF397 0.42 -0.3
429,533 + GFF397 0.42 +0.3
429,533 + GFF397 0.42 -1.3
429,533 + GFF397 0.42 -0.3
429,533 + GFF397 0.42 -1.9
429,533 + GFF397 0.42 -2.0
429,533 + GFF397 0.42 -1.9
429,534 - GFF397 0.42 -0.1
429,534 - GFF397 0.42 -0.2
429,534 - GFF397 0.42 +0.4
429,534 - GFF397 0.42 +0.4
429,534 - GFF397 0.42 +2.3
429,534 - GFF397 0.42 -1.3
429,534 - GFF397 0.42 -1.3
429,534 - GFF397 0.42 -1.0
429,534 - GFF397 0.42 +0.9
429,534 - GFF397 0.42 -1.9
429,534 - GFF397 0.42 +0.2
429,534 - GFF397 0.42 -0.9
429,534 - GFF397 0.42 -0.1
429,642 + GFF397 0.49 -0.1
429,642 + GFF397 0.49 -0.5
429,642 + GFF397 0.49 -1.5
429,642 + GFF397 0.49 -0.5
429,642 + GFF397 0.49 +0.3
429,642 + GFF397 0.49 +0.2
429,643 - GFF397 0.50 +1.0
430,270 + +0.3
430,270 + -0.2
430,270 + +0.7
430,271 - -0.3
430,271 - +0.3
430,271 - +0.2
430,271 - +1.0
430,271 - -0.0
430,271 - +0.1
430,395 - -0.2
430,475 + GFF398 0.11 +0.1
430,475 + GFF398 0.11 -1.3
430,475 + GFF398 0.11 -1.0
430,475 + GFF398 0.11 -0.4
430,475 + GFF398 0.11 +0.2
430,475 + GFF398 0.11 -0.9
430,475 + GFF398 0.11 +0.4
430,475 + GFF398 0.11 -0.2
430,475 + GFF398 0.11 +1.7
430,475 + GFF398 0.11 +0.1
430,475 + GFF398 0.11 -0.8
430,475 + GFF398 0.11 +0.2
430,475 + GFF398 0.11 +0.5
430,475 + GFF398 0.11 -0.5
430,475 + GFF398 0.11 -0.7
430,476 - GFF398 0.11 -0.1
430,476 - GFF398 0.11 -0.3
430,476 - GFF398 0.11 -0.4
430,476 - GFF398 0.11 -0.3
430,476 - GFF398 0.11 +0.9
430,476 - GFF398 0.11 -0.7
430,476 - GFF398 0.11 -1.0
430,476 - GFF398 0.11 -0.4
430,476 - GFF398 0.11 +0.0
430,476 - GFF398 0.11 +0.9
430,476 - GFF398 0.11 -0.7
430,476 - GFF398 0.11 +0.8
430,476 - GFF398 0.11 +0.9
430,476 - GFF398 0.11 -1.6
430,546 + GFF398 0.20 +0.4
430,619 + GFF398 0.30 -0.5
430,619 + GFF398 0.30 -0.7
430,619 + GFF398 0.30 -1.3
430,619 + GFF398 0.30 -0.9
430,619 + GFF398 0.30 -0.7
430,620 - GFF398 0.30 -0.4
430,620 - GFF398 0.30 +0.6
430,682 + GFF398 0.38 -0.6
430,682 + GFF398 0.38 +0.5
430,682 + GFF398 0.38 +0.5
430,682 + GFF398 0.38 -0.6
430,683 - GFF398 0.38 +1.3
430,683 - GFF398 0.38 +1.1
430,683 - GFF398 0.38 +1.6
430,683 - GFF398 0.38 -1.8
431,200 + -0.9
431,201 - +0.2
431,201 - -0.2
431,537 - GFF399 0.14 -2.3
431,594 - GFF399 0.16 -2.2
431,594 - GFF399 0.16 +1.6
431,635 + GFF399 0.18 -0.7
431,635 + GFF399 0.18 -0.3
431,635 + GFF399 0.18 -0.6
431,635 + GFF399 0.18 +1.3
431,635 + GFF399 0.18 -0.1
431,635 + GFF399 0.18 -1.2
431,635 + GFF399 0.18 -0.4
431,635 + GFF399 0.18 -0.3
431,635 + GFF399 0.18 +1.1
431,635 + GFF399 0.18 +0.7
431,635 + GFF399 0.18 +0.6
431,636 - GFF399 0.18 -0.7
431,636 - GFF399 0.18 -1.5
431,636 - GFF399 0.18 -1.2
431,636 - GFF399 0.18 +0.7
431,636 - GFF399 0.18 +0.1
431,636 - GFF399 0.18 +0.1
431,695 + GFF399 0.21 -0.1
431,695 + GFF399 0.21 +0.5
431,695 + GFF399 0.21 +0.3
431,696 - GFF399 0.21 -0.4
431,696 - GFF399 0.21 +0.9
431,722 + GFF399 0.22 -1.3
431,722 + GFF399 0.22 +1.0
431,722 + GFF399 0.22 -0.0
431,722 + GFF399 0.22 +1.9
431,722 + GFF399 0.22 -0.1
431,722 + GFF399 0.22 +0.0
431,722 + GFF399 0.22 +1.3
431,722 + GFF399 0.22 -0.3
431,722 + GFF399 0.22 +0.6
431,722 + GFF399 0.22 -0.1
431,722 + GFF399 0.22 -1.3
431,722 + GFF399 0.22 +0.6
431,723 - GFF399 0.22 -0.6
431,723 - GFF399 0.22 -1.1
431,723 - GFF399 0.22 -1.0
431,723 - GFF399 0.22 -0.9
431,723 - GFF399 0.22 -1.0
431,723 - GFF399 0.22 -0.0
431,723 - GFF399 0.22 +0.5
431,723 - GFF399 0.22 -2.1
431,723 - GFF399 0.22 +0.2
431,723 - GFF399 0.22 +0.0
431,723 - GFF399 0.22 -0.2
431,723 - GFF399 0.22 -0.0
432,025 + GFF399 0.35 +0.9
432,025 + GFF399 0.35 -1.3
432,025 + GFF399 0.35 +0.0
432,025 + GFF399 0.35 -2.1
432,025 + GFF399 0.35 -0.0
432,025 + GFF399 0.35 +0.3
432,026 - GFF399 0.35 +0.3
432,026 - GFF399 0.35 +1.3
432,026 - GFF399 0.35 +0.3
432,034 + GFF399 0.35 -0.2
432,034 + GFF399 0.35 +0.8
432,034 + GFF399 0.35 +1.3
432,034 + GFF399 0.35 -0.7
432,034 + GFF399 0.35 -0.6
432,034 + GFF399 0.35 +1.3
432,035 - GFF399 0.35 -0.7
432,035 - GFF399 0.35 +0.3
432,035 - GFF399 0.35 -0.7
432,070 + GFF399 0.37 +0.9
432,070 + GFF399 0.37 -0.8
432,070 + GFF399 0.37 -1.9
432,070 + GFF399 0.37 +0.2
432,070 + GFF399 0.37 -0.2
432,070 + GFF399 0.37 -1.1
432,070 + GFF399 0.37 -0.0
432,070 + GFF399 0.37 +0.0
432,071 - GFF399 0.37 +0.9
432,071 - GFF399 0.37 -1.6
432,071 - GFF399 0.37 -3.0
432,071 - GFF399 0.37 -0.7
432,071 - GFF399 0.37 +0.5
432,071 - GFF399 0.37 -0.8

Or see this region's nucleotide sequence