Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3970 and GFF3971 overlap by 1 nucleotides GFF3971 and GFF3972 are separated by 14 nucleotides GFF3972 and GFF3973 overlap by 4 nucleotides
GFF3970 - Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13), at 172,701 to 174,014
GFF3970
GFF3971 - Aromatic-ring-hydroxylating dioxygenase, beta subunit (EC 1.14.12.3), at 174,014 to 174,505
GFF3971
GFF3972 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 174,520 to 176,148
GFF3972
GFF3973 - FIG01198345: hypothetical protein, at 176,145 to 177,320
GFF3973
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 173.547 kb on + strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.785 kb on - strand, within GFF3970 at 174.387 kb on - strand, within GFF3971 at 174.700 kb on + strand, within GFF3972 at 175.025 kb on - strand, within GFF3972 at 175.075 kb on + strand, within GFF3972 at 175.076 kb on - strand, within GFF3972 at 175.642 kb on + strand, within GFF3972 at 175.990 kb on + strand at 175.991 kb on - strand at 175.993 kb on + strand at 176.008 kb on + strand at 176.208 kb on + strand at 176.209 kb on - strand at 176.565 kb on + strand, within GFF3973 at 176.566 kb on - strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.626 kb on - strand, within GFF3973 at 176.730 kb on + strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.947 kb on - strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.995 kb on - strand, within GFF3973
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 173,547 + GFF3970 0.64 -0.2 173,547 + GFF3970 0.64 +0.0 173,548 - GFF3970 0.64 -0.3 173,548 - GFF3970 0.64 -0.6 173,784 + GFF3970 0.82 -0.0 173,784 + GFF3970 0.82 -0.8 173,784 + GFF3970 0.82 -1.0 173,784 + GFF3970 0.82 +0.1 173,785 - GFF3970 0.82 +0.5 174,387 - GFF3971 0.76 +0.5 174,700 + GFF3972 0.11 -0.1 175,025 - GFF3972 0.31 +1.5 175,075 + GFF3972 0.34 -0.2 175,076 - GFF3972 0.34 -2.2 175,642 + GFF3972 0.69 -1.1 175,990 + +2.1 175,991 - +0.1 175,993 + -1.8 176,008 + -0.5 176,208 + +0.0 176,209 - +0.5 176,565 + GFF3973 0.36 +0.4 176,566 - GFF3973 0.36 -0.3 176,613 + GFF3973 0.40 -0.9 176,613 + GFF3973 0.40 -0.0 176,614 - GFF3973 0.40 +0.7 176,614 - GFF3973 0.40 +0.1 176,614 - GFF3973 0.40 +0.3 176,626 - GFF3973 0.41 +0.1 176,730 + GFF3973 0.50 +1.1 176,731 - GFF3973 0.50 -0.6 176,731 - GFF3973 0.50 -0.7 176,947 - GFF3973 0.68 +0.5 176,994 + GFF3973 0.72 +0.2 176,994 + GFF3973 0.72 -2.4 176,994 + GFF3973 0.72 -1.3 176,995 - GFF3973 0.72 -0.0
Or see this region's nucleotide sequence