Strain Fitness in Variovorax sp. SCN45 around GFF3938

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3936 and GFF3937 are separated by 10 nucleotidesGFF3937 and GFF3938 overlap by 40 nucleotidesGFF3938 and GFF3939 overlap by 4 nucleotidesGFF3939 and GFF3940 are separated by 125 nucleotides GFF3936 - no description, at 139,571 to 141,181 GFF3936 GFF3937 - Transcriptional regulator, AraC family, at 141,192 to 142,196 GFF3937 GFF3938 - Intracellular protease, at 142,157 to 142,783 GFF3938 GFF3939 - Hydrolase, HAD superfamily, at 142,780 to 143,340 GFF3939 GFF3940 - putative membrane protein, at 143,466 to 144,557 GFF3940 Position (kb) 142 143Strain fitness (log2 ratio) -2 -1 0 1 2at 141.364 kb on + strand, within GFF3937at 141.364 kb on + strand, within GFF3937at 141.365 kb on - strand, within GFF3937at 141.365 kb on - strand, within GFF3937at 141.527 kb on - strand, within GFF3937at 141.632 kb on + strand, within GFF3937at 141.680 kb on - strand, within GFF3937at 142.158 kb on + strandat 142.159 kb on - strandat 142.200 kb on + strandat 142.200 kb on + strandat 142.200 kb on + strandat 142.201 kb on - strandat 142.201 kb on - strandat 142.201 kb on - strandat 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.767 kb on - strandat 142.767 kb on - strandat 142.767 kb on - strandat 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.187 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.286 kb on - strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.509 kb on + strandat 143.509 kb on + strandat 143.510 kb on - strandat 143.510 kb on - strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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141,364 + GFF3937 0.17 -0.0
141,364 + GFF3937 0.17 +0.2
141,365 - GFF3937 0.17 -1.1
141,365 - GFF3937 0.17 +1.0
141,527 - GFF3937 0.33 -0.2
141,632 + GFF3937 0.44 -0.2
141,680 - GFF3937 0.49 +1.1
142,158 + -0.6
142,159 - +0.5
142,200 + +0.2
142,200 + -0.5
142,200 + -0.0
142,201 - +2.0
142,201 - -0.0
142,201 - -1.0
142,553 + GFF3938 0.63 +1.5
142,553 + GFF3938 0.63 +0.3
142,553 + GFF3938 0.63 +0.1
142,553 + GFF3938 0.63 -0.0
142,553 + GFF3938 0.63 +0.8
142,553 + GFF3938 0.63 +0.9
142,553 + GFF3938 0.63 -0.6
142,553 + GFF3938 0.63 -0.6
142,553 + GFF3938 0.63 -0.3
142,553 + GFF3938 0.63 -0.6
142,553 + GFF3938 0.63 +0.4
142,553 + GFF3938 0.63 -0.6
142,554 - GFF3938 0.63 -1.3
142,554 - GFF3938 0.63 +0.8
142,554 - GFF3938 0.63 -0.4
142,554 - GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 -1.8
142,554 - GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 +0.5
142,554 - GFF3938 0.63 +0.3
142,554 - GFF3938 0.63 +0.7
142,554 - GFF3938 0.63 +0.3
142,554 - GFF3938 0.63 -0.2
142,554 - GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 -0.3
142,554 - GFF3938 0.63 +0.8
142,554 - GFF3938 0.63 +0.5
142,554 - GFF3938 0.63 +1.2
142,554 - GFF3938 0.63 -0.8
142,767 - +1.2
142,767 - -0.1
142,767 - -1.1
142,934 + GFF3939 0.27 +0.1
142,934 + GFF3939 0.27 +0.6
142,934 + GFF3939 0.27 +0.3
142,934 + GFF3939 0.27 +0.3
142,934 + GFF3939 0.27 +0.1
142,934 + GFF3939 0.27 -0.2
142,934 + GFF3939 0.27 -0.4
142,934 + GFF3939 0.27 -0.0
142,934 + GFF3939 0.27 +0.0
142,934 + GFF3939 0.27 -1.8
142,935 - GFF3939 0.28 -1.8
142,935 - GFF3939 0.28 +0.8
143,037 + GFF3939 0.46 +0.3
143,037 + GFF3939 0.46 -0.0
143,187 + GFF3939 0.73 -0.7
143,258 + GFF3939 0.85 -0.9
143,258 + GFF3939 0.85 +0.3
143,258 + GFF3939 0.85 -0.1
143,259 - GFF3939 0.85 +0.0
143,259 - GFF3939 0.85 +0.4
143,259 - GFF3939 0.85 -0.6
143,259 - GFF3939 0.85 +0.6
143,286 - +0.6
143,503 + -0.4
143,503 + -0.6
143,503 + +0.3
143,503 + -1.8
143,503 + -0.3
143,503 + +0.4
143,503 + -0.8
143,503 + -2.0
143,504 - -1.0
143,504 - -0.9
143,504 - -0.6
143,509 + -1.0
143,509 + -1.0
143,510 - -1.5
143,510 - -0.7
143,512 + +1.0
143,512 + +0.7
143,512 + +0.1
143,513 - -0.0
143,513 - -1.4
143,513 - -0.4
143,632 + GFF3940 0.15 +1.0
143,632 + GFF3940 0.15 -0.2
143,632 + GFF3940 0.15 +0.2
143,632 + GFF3940 0.15 -2.1
143,633 - GFF3940 0.15 +1.5
143,633 - GFF3940 0.15 +0.5
143,633 - GFF3940 0.15 +1.4
143,633 - GFF3940 0.15 -0.1
143,633 - GFF3940 0.15 -0.4
143,745 - GFF3940 0.26 +0.5
143,745 - GFF3940 0.26 -0.0
143,745 - GFF3940 0.26 +1.0

Or see this region's nucleotide sequence