Strain Fitness in Variovorax sp. SCN45 around GFF3770

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3769 and GFF3770 are separated by 8 nucleotidesGFF3770 and GFF3771 are separated by 72 nucleotidesGFF3771 and GFF3772 overlap by 4 nucleotides GFF3769 - FIG022979: MoxR-like ATPases, at 260,500 to 261,495 GFF3769 GFF3770 - hypothetical protein, at 261,504 to 262,868 GFF3770 GFF3771 - no description, at 262,941 to 263,495 GFF3771 GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412 GFF3772 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 260.713 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 261.007 kb on + strand, within GFF3769at 261.007 kb on + strand, within GFF3769at 261.008 kb on - strand, within GFF3769at 261.008 kb on - strand, within GFF3769at 261.179 kb on + strand, within GFF3769at 261.179 kb on + strand, within GFF3769at 261.180 kb on - strand, within GFF3769at 261.180 kb on - strand, within GFF3769at 261.226 kb on + strand, within GFF3769at 261.368 kb on + strand, within GFF3769at 261.369 kb on - strand, within GFF3769at 261.493 kb on + strandat 261.494 kb on - strandat 261.606 kb on + strandat 261.607 kb on - strandat 261.758 kb on + strand, within GFF3770at 261.758 kb on + strand, within GFF3770at 261.758 kb on + strand, within GFF3770at 261.758 kb on + strand, within GFF3770at 261.758 kb on + strand, within GFF3770at 261.759 kb on - strand, within GFF3770at 261.759 kb on - strand, within GFF3770at 261.891 kb on + strand, within GFF3770at 261.892 kb on - strand, within GFF3770at 262.041 kb on + strand, within GFF3770at 262.041 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.092 kb on + strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.093 kb on - strand, within GFF3770at 262.137 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.347 kb on + strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.348 kb on - strand, within GFF3770at 262.503 kb on + strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.504 kb on - strand, within GFF3770at 262.866 kb on + strandat 262.899 kb on + strandat 262.899 kb on + strandat 262.900 kb on - strandat 262.900 kb on - strandat 262.900 kb on - strandat 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.001 kb on + strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.002 kb on - strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.079 kb on + strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.080 kb on - strand, within GFF3771at 263.088 kb on + strand, within GFF3771at 263.089 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.203 kb on - strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.214 kb on + strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.215 kb on - strand, within GFF3771at 263.445 kb on + strandat 263.445 kb on + strandat 263.446 kb on - strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.493 kb on + strandat 263.655 kb on + strand, within GFF3772at 263.656 kb on - strand, within GFF3772

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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260,713 + GFF3769 0.21 -0.5
260,917 + GFF3769 0.42 -1.3
260,917 + GFF3769 0.42 -2.4
260,917 + GFF3769 0.42 -0.3
260,918 - GFF3769 0.42 -1.2
260,918 - GFF3769 0.42 -0.8
260,918 - GFF3769 0.42 +1.7
260,918 - GFF3769 0.42 +0.2
261,007 + GFF3769 0.51 -2.4
261,007 + GFF3769 0.51 +1.1
261,008 - GFF3769 0.51 -0.9
261,008 - GFF3769 0.51 -0.4
261,179 + GFF3769 0.68 -0.3
261,179 + GFF3769 0.68 +0.3
261,180 - GFF3769 0.68 -1.2
261,180 - GFF3769 0.68 +0.3
261,226 + GFF3769 0.73 -0.3
261,368 + GFF3769 0.87 +0.4
261,369 - GFF3769 0.87 +1.4
261,493 + -0.0
261,494 - -0.2
261,606 + -0.8
261,607 - -0.7
261,758 + GFF3770 0.19 -0.2
261,758 + GFF3770 0.19 -0.0
261,758 + GFF3770 0.19 +0.0
261,758 + GFF3770 0.19 +2.2
261,758 + GFF3770 0.19 +0.1
261,759 - GFF3770 0.19 -1.0
261,759 - GFF3770 0.19 +0.3
261,891 + GFF3770 0.28 -0.8
261,892 - GFF3770 0.28 +0.7
262,041 + GFF3770 0.39 +0.0
262,041 + GFF3770 0.39 +0.0
262,092 + GFF3770 0.43 +2.2
262,092 + GFF3770 0.43 +0.3
262,092 + GFF3770 0.43 -0.7
262,092 + GFF3770 0.43 +1.3
262,092 + GFF3770 0.43 -1.2
262,092 + GFF3770 0.43 +0.5
262,093 - GFF3770 0.43 -0.0
262,093 - GFF3770 0.43 +0.4
262,093 - GFF3770 0.43 -1.0
262,093 - GFF3770 0.43 -1.2
262,137 + GFF3770 0.46 -0.4
262,347 + GFF3770 0.62 +2.2
262,347 + GFF3770 0.62 +0.5
262,347 + GFF3770 0.62 -0.4
262,347 + GFF3770 0.62 -0.6
262,347 + GFF3770 0.62 -0.6
262,347 + GFF3770 0.62 -0.3
262,348 - GFF3770 0.62 +0.6
262,348 - GFF3770 0.62 +0.8
262,348 - GFF3770 0.62 +0.2
262,348 - GFF3770 0.62 -1.2
262,503 + GFF3770 0.73 -0.5
262,504 - GFF3770 0.73 +0.5
262,504 - GFF3770 0.73 +1.8
262,866 + -0.5
262,899 + +0.1
262,899 + -0.8
262,900 - +0.1
262,900 - +0.3
262,900 - +0.2
263,001 + GFF3771 0.11 +0.4
263,001 + GFF3771 0.11 -0.3
263,001 + GFF3771 0.11 -0.3
263,001 + GFF3771 0.11 -0.3
263,001 + GFF3771 0.11 -0.1
263,001 + GFF3771 0.11 -0.8
263,001 + GFF3771 0.11 -1.8
263,002 - GFF3771 0.11 -0.4
263,002 - GFF3771 0.11 +0.7
263,002 - GFF3771 0.11 +0.2
263,002 - GFF3771 0.11 -0.4
263,002 - GFF3771 0.11 -0.2
263,079 + GFF3771 0.25 -0.4
263,079 + GFF3771 0.25 -0.1
263,079 + GFF3771 0.25 +0.2
263,079 + GFF3771 0.25 +0.8
263,079 + GFF3771 0.25 +0.7
263,079 + GFF3771 0.25 +0.7
263,079 + GFF3771 0.25 -0.7
263,080 - GFF3771 0.25 -0.7
263,080 - GFF3771 0.25 +0.3
263,080 - GFF3771 0.25 -0.2
263,080 - GFF3771 0.25 +0.8
263,080 - GFF3771 0.25 -0.4
263,080 - GFF3771 0.25 -0.5
263,080 - GFF3771 0.25 +0.4
263,088 + GFF3771 0.26 -0.2
263,089 - GFF3771 0.27 +0.2
263,203 - GFF3771 0.47 -1.2
263,203 - GFF3771 0.47 -0.3
263,214 + GFF3771 0.49 +1.1
263,214 + GFF3771 0.49 -1.1
263,214 + GFF3771 0.49 +0.2
263,214 + GFF3771 0.49 -1.3
263,214 + GFF3771 0.49 -0.5
263,215 - GFF3771 0.49 +0.8
263,215 - GFF3771 0.49 +0.1
263,215 - GFF3771 0.49 -0.5
263,215 - GFF3771 0.49 +0.0
263,215 - GFF3771 0.49 -0.7
263,215 - GFF3771 0.49 +0.2
263,215 - GFF3771 0.49 -0.5
263,215 - GFF3771 0.49 -0.3
263,215 - GFF3771 0.49 +0.6
263,215 - GFF3771 0.49 -1.0
263,215 - GFF3771 0.49 +1.7
263,445 + -0.3
263,445 + -0.9
263,446 - +0.8
263,454 + +0.1
263,454 + -0.6
263,454 + -1.2
263,454 + -0.3
263,454 + -0.2
263,454 + -1.1
263,454 + -0.2
263,455 - -0.6
263,455 - -0.7
263,455 - +1.1
263,455 - +0.2
263,493 + -0.6
263,655 + GFF3772 0.18 -0.3
263,656 - GFF3772 0.18 +0.7

Or see this region's nucleotide sequence