Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3768 and GFF3769 are separated by 17 nucleotides GFF3769 and GFF3770 are separated by 8 nucleotides
GFF3768 - no description, at 259,232 to 260,482
GFF3768
GFF3769 - FIG022979: MoxR-like ATPases, at 260,500 to 261,495
GFF3769
GFF3770 - hypothetical protein, at 261,504 to 262,868
GFF3770
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.551 kb on - strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 260.261 kb on + strand, within GFF3768 at 260.261 kb on + strand, within GFF3768 at 260.713 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 261.007 kb on + strand, within GFF3769 at 261.007 kb on + strand, within GFF3769 at 261.008 kb on - strand, within GFF3769 at 261.008 kb on - strand, within GFF3769 at 261.179 kb on + strand, within GFF3769 at 261.179 kb on + strand, within GFF3769 at 261.180 kb on - strand, within GFF3769 at 261.180 kb on - strand, within GFF3769 at 261.226 kb on + strand, within GFF3769 at 261.368 kb on + strand, within GFF3769 at 261.369 kb on - strand, within GFF3769 at 261.493 kb on + strand at 261.494 kb on - strand at 261.606 kb on + strand at 261.607 kb on - strand at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.759 kb on - strand, within GFF3770 at 261.759 kb on - strand, within GFF3770 at 261.891 kb on + strand, within GFF3770 at 261.892 kb on - strand, within GFF3770 at 262.041 kb on + strand, within GFF3770 at 262.041 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.137 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 259,550 + GFF3768 0.25 +0.2 259,550 + GFF3768 0.25 +0.8 259,550 + GFF3768 0.25 +0.8 259,550 + GFF3768 0.25 +0.7 259,551 - GFF3768 0.25 -0.8 259,765 + GFF3768 0.43 -0.2 259,765 + GFF3768 0.43 +0.8 259,765 + GFF3768 0.43 -0.1 259,765 + GFF3768 0.43 -0.4 259,766 - GFF3768 0.43 -2.3 259,766 - GFF3768 0.43 +0.2 259,766 - GFF3768 0.43 +0.7 259,766 - GFF3768 0.43 -0.5 260,261 + GFF3768 0.82 -0.3 260,261 + GFF3768 0.82 +0.3 260,713 + GFF3769 0.21 -0.5 260,917 + GFF3769 0.42 -1.3 260,917 + GFF3769 0.42 -2.4 260,917 + GFF3769 0.42 -0.3 260,918 - GFF3769 0.42 -1.2 260,918 - GFF3769 0.42 -0.8 260,918 - GFF3769 0.42 +1.7 260,918 - GFF3769 0.42 +0.2 261,007 + GFF3769 0.51 -2.4 261,007 + GFF3769 0.51 +1.1 261,008 - GFF3769 0.51 -0.9 261,008 - GFF3769 0.51 -0.4 261,179 + GFF3769 0.68 -0.3 261,179 + GFF3769 0.68 +0.3 261,180 - GFF3769 0.68 -1.2 261,180 - GFF3769 0.68 +0.3 261,226 + GFF3769 0.73 -0.3 261,368 + GFF3769 0.87 +0.4 261,369 - GFF3769 0.87 +1.4 261,493 + -0.0 261,494 - -0.2 261,606 + -0.8 261,607 - -0.7 261,758 + GFF3770 0.19 -0.2 261,758 + GFF3770 0.19 -0.0 261,758 + GFF3770 0.19 +0.0 261,758 + GFF3770 0.19 +2.2 261,758 + GFF3770 0.19 +0.1 261,759 - GFF3770 0.19 -1.0 261,759 - GFF3770 0.19 +0.3 261,891 + GFF3770 0.28 -0.8 261,892 - GFF3770 0.28 +0.7 262,041 + GFF3770 0.39 +0.0 262,041 + GFF3770 0.39 +0.0 262,092 + GFF3770 0.43 +2.2 262,092 + GFF3770 0.43 +0.3 262,092 + GFF3770 0.43 -0.7 262,092 + GFF3770 0.43 +1.3 262,092 + GFF3770 0.43 -1.2 262,092 + GFF3770 0.43 +0.5 262,093 - GFF3770 0.43 -0.0 262,093 - GFF3770 0.43 +0.4 262,093 - GFF3770 0.43 -1.0 262,093 - GFF3770 0.43 -1.2 262,137 + GFF3770 0.46 -0.4 262,347 + GFF3770 0.62 +2.2 262,347 + GFF3770 0.62 +0.5 262,347 + GFF3770 0.62 -0.4 262,347 + GFF3770 0.62 -0.6 262,347 + GFF3770 0.62 -0.6 262,347 + GFF3770 0.62 -0.3 262,348 - GFF3770 0.62 +0.6 262,348 - GFF3770 0.62 +0.8 262,348 - GFF3770 0.62 +0.2 262,348 - GFF3770 0.62 -1.2
Or see this region's nucleotide sequence