Strain Fitness in Variovorax sp. SCN45 around GFF3743

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3742 and GFF3743 are separated by 32 nucleotidesGFF3743 and GFF3744 are separated by 51 nucleotidesGFF3744 and GFF3745 are separated by 25 nucleotides GFF3742 - Type IV pilus assembly ATPase component PilU, at 238,082 to 239,218 GFF3742 GFF3743 - Twitching motility protein PilT, at 239,251 to 240,294 GFF3743 GFF3744 - Pyridoxal phosphate-containing protein YggS, at 240,346 to 241,047 GFF3744 GFF3745 - Uncharacterized UPF0721 integral membrane protein, at 241,073 to 241,813 GFF3745 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 238.476 kb on - strand, within GFF3742at 239.310 kb on + strandat 239.310 kb on + strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.840 kb on + strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.108 kb on - strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.141 kb on - strand, within GFF3743at 240.346 kb on - strandat 240.346 kb on - strandat 240.377 kb on + strandat 240.377 kb on + strandat 240.377 kb on + strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 241.173 kb on + strand, within GFF3745at 241.173 kb on + strand, within GFF3745at 241.174 kb on - strand, within GFF3745at 241.242 kb on + strand, within GFF3745at 241.242 kb on + strand, within GFF3745at 241.243 kb on - strand, within GFF3745at 241.243 kb on - strand, within GFF3745

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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238,476 - GFF3742 0.35 -1.7
239,310 + +0.5
239,310 + -1.9
239,311 - +0.2
239,311 - -0.3
239,311 - +0.5
239,311 - +0.2
239,311 - +1.5
239,387 + GFF3743 0.13 +0.2
239,387 + GFF3743 0.13 -0.3
239,387 + GFF3743 0.13 -0.7
239,387 + GFF3743 0.13 +0.5
239,387 + GFF3743 0.13 -0.2
239,387 + GFF3743 0.13 +0.4
239,387 + GFF3743 0.13 -1.1
239,387 + GFF3743 0.13 -2.3
239,387 + GFF3743 0.13 -1.5
239,387 + GFF3743 0.13 +1.0
239,387 + GFF3743 0.13 -0.7
239,388 - GFF3743 0.13 +1.0
239,388 - GFF3743 0.13 -0.8
239,388 - GFF3743 0.13 +0.5
239,388 - GFF3743 0.13 -0.6
239,388 - GFF3743 0.13 +0.1
239,388 - GFF3743 0.13 +1.7
239,388 - GFF3743 0.13 -0.1
239,388 - GFF3743 0.13 +1.1
239,388 - GFF3743 0.13 +1.2
239,388 - GFF3743 0.13 +0.2
239,388 - GFF3743 0.13 +0.4
239,607 + GFF3743 0.34 -1.0
239,607 + GFF3743 0.34 -0.8
239,607 + GFF3743 0.34 -2.0
239,607 + GFF3743 0.34 +0.7
239,607 + GFF3743 0.34 +0.7
239,607 + GFF3743 0.34 +0.1
239,607 + GFF3743 0.34 +0.8
239,608 - GFF3743 0.34 +1.2
239,608 - GFF3743 0.34 +3.2
239,608 - GFF3743 0.34 +0.1
239,671 + GFF3743 0.40 +0.5
239,671 + GFF3743 0.40 -0.7
239,671 + GFF3743 0.40 -1.0
239,671 + GFF3743 0.40 +0.6
239,672 - GFF3743 0.40 +0.4
239,672 - GFF3743 0.40 +1.2
239,672 - GFF3743 0.40 +1.0
239,672 - GFF3743 0.40 +0.5
239,672 - GFF3743 0.40 +0.3
239,672 - GFF3743 0.40 -0.4
239,840 + GFF3743 0.56 +0.3
239,841 - GFF3743 0.57 -0.2
239,841 - GFF3743 0.57 -0.3
239,858 + GFF3743 0.58 +0.1
239,858 + GFF3743 0.58 -0.8
239,858 + GFF3743 0.58 +0.3
239,858 + GFF3743 0.58 -0.2
239,858 + GFF3743 0.58 -0.2
239,858 + GFF3743 0.58 -0.3
239,858 + GFF3743 0.58 +0.8
239,858 + GFF3743 0.58 -2.2
239,858 + GFF3743 0.58 +0.9
239,859 - GFF3743 0.58 -0.0
239,859 - GFF3743 0.58 -1.4
239,859 - GFF3743 0.58 +0.9
239,859 - GFF3743 0.58 +1.0
239,859 - GFF3743 0.58 -0.1
239,859 - GFF3743 0.58 +0.3
239,859 - GFF3743 0.58 -0.8
239,859 - GFF3743 0.58 +0.2
239,859 - GFF3743 0.58 +0.5
239,859 - GFF3743 0.58 +0.1
239,859 - GFF3743 0.58 -0.8
240,107 + GFF3743 0.82 -0.1
240,107 + GFF3743 0.82 +0.7
240,107 + GFF3743 0.82 +0.7
240,107 + GFF3743 0.82 +0.2
240,107 + GFF3743 0.82 +1.1
240,107 + GFF3743 0.82 -0.5
240,108 - GFF3743 0.82 -0.6
240,140 + GFF3743 0.85 -1.2
240,140 + GFF3743 0.85 -0.7
240,140 + GFF3743 0.85 +0.4
240,140 + GFF3743 0.85 +1.2
240,140 + GFF3743 0.85 -2.9
240,141 - GFF3743 0.85 +0.0
240,346 - -0.5
240,346 - -0.4
240,377 + -0.5
240,377 + -1.8
240,377 + -1.2
240,378 - -0.3
240,378 - -0.2
240,378 - -1.3
240,378 - -0.5
240,378 - +0.1
240,378 - -0.3
240,378 - -1.4
241,173 + GFF3745 0.13 +0.1
241,173 + GFF3745 0.13 -0.3
241,174 - GFF3745 0.14 -1.2
241,242 + GFF3745 0.23 +0.2
241,242 + GFF3745 0.23 +0.5
241,243 - GFF3745 0.23 -0.2
241,243 - GFF3745 0.23 -2.3

Or see this region's nucleotide sequence