Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3615 and GFF3616 are separated by 71 nucleotides GFF3616 and GFF3617 are separated by 52 nucleotides GFF3617 and GFF3618 are separated by 44 nucleotides
GFF3615 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 128,583 to 129,329
GFF3615
GFF3616 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 129,401 to 130,006
GFF3616
GFF3617 - Dienelactone hydrolase family protein, at 130,059 to 130,742
GFF3617
GFF3618 - Transcriptional regulator, LysR family, at 130,787 to 131,695
GFF3618
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.232 kb on + strand, within GFF3615 at 129.232 kb on + strand, within GFF3615 at 129.232 kb on + strand, within GFF3615 at 129.232 kb on + strand, within GFF3615 at 129.233 kb on - strand, within GFF3615 at 129.334 kb on + strand at 129.334 kb on + strand at 129.334 kb on + strand at 129.335 kb on - strand at 129.335 kb on - strand at 129.335 kb on - strand at 129.335 kb on - strand at 129.335 kb on - strand at 129.364 kb on - strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.380 kb on + strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.381 kb on - strand at 129.425 kb on + strand at 129.425 kb on + strand at 129.425 kb on + strand at 129.428 kb on + strand at 129.428 kb on + strand at 129.428 kb on + strand at 129.428 kb on + strand at 129.428 kb on + strand at 129.429 kb on - strand at 129.429 kb on - strand at 129.429 kb on - strand at 129.429 kb on - strand at 129.429 kb on - strand at 129.455 kb on + strand at 129.455 kb on + strand at 129.455 kb on + strand at 129.455 kb on + strand at 129.455 kb on + strand at 129.455 kb on + strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.456 kb on - strand at 129.520 kb on + strand, within GFF3616 at 129.593 kb on + strand, within GFF3616 at 129.593 kb on + strand, within GFF3616 at 129.881 kb on + strand, within GFF3616 at 129.882 kb on - strand, within GFF3616 at 129.882 kb on - strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.890 kb on + strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.891 kb on - strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.935 kb on + strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.936 kb on - strand, within GFF3616 at 129.954 kb on + strand at 129.954 kb on + strand at 129.954 kb on + strand at 129.955 kb on - strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.044 kb on + strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.045 kb on - strand at 130.050 kb on + strand at 130.050 kb on + strand at 130.051 kb on - strand at 130.051 kb on - strand at 130.110 kb on + strand at 130.110 kb on + strand at 130.110 kb on + strand at 130.110 kb on + strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.206 kb on + strand, within GFF3617 at 130.206 kb on + strand, within GFF3617 at 130.207 kb on - strand, within GFF3617 at 130.221 kb on + strand, within GFF3617 at 130.221 kb on + strand, within GFF3617 at 130.222 kb on - strand, within GFF3617 at 130.222 kb on - strand, within GFF3617 at 130.222 kb on - strand, within GFF3617 at 130.278 kb on + strand, within GFF3617 at 130.278 kb on + strand, within GFF3617 at 130.278 kb on + strand, within GFF3617 at 130.278 kb on + strand, within GFF3617 at 130.378 kb on - strand, within GFF3617 at 130.413 kb on + strand, within GFF3617 at 130.413 kb on + strand, within GFF3617 at 130.414 kb on - strand, within GFF3617 at 130.483 kb on - strand, within GFF3617 at 130.483 kb on - strand, within GFF3617 at 130.483 kb on - strand, within GFF3617 at 130.485 kb on + strand, within GFF3617 at 130.485 kb on + strand, within GFF3617 at 130.485 kb on + strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.486 kb on - strand, within GFF3617 at 130.632 kb on + strand, within GFF3617 at 130.674 kb on + strand at 130.675 kb on - strand at 130.675 kb on - strand at 130.675 kb on - strand at 130.675 kb on - strand at 130.675 kb on - strand at 130.884 kb on + strand, within GFF3618 at 130.884 kb on + strand, within GFF3618 at 130.885 kb on - strand, within GFF3618 at 130.885 kb on - strand, within GFF3618 at 130.917 kb on + strand, within GFF3618 at 130.918 kb on - strand, within GFF3618 at 130.918 kb on - strand, within GFF3618 at 130.918 kb on - strand, within GFF3618 at 130.918 kb on - strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.983 kb on + strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 130.984 kb on - strand, within GFF3618 at 131.184 kb on + strand, within GFF3618 at 131.184 kb on + strand, within GFF3618 at 131.185 kb on - strand, within GFF3618 at 131.343 kb on + strand, within GFF3618 at 131.343 kb on + strand, within GFF3618 at 131.344 kb on - strand, within GFF3618 at 131.344 kb on - strand, within GFF3618 at 131.344 kb on - strand, within GFF3618 at 131.344 kb on - strand, within GFF3618 at 131.346 kb on + strand, within GFF3618 at 131.346 kb on + strand, within GFF3618 at 131.346 kb on + strand, within GFF3618 at 131.346 kb on + strand, within GFF3618 at 131.346 kb on + strand, within GFF3618 at 131.347 kb on - strand, within GFF3618 at 131.347 kb on - strand, within GFF3618 at 131.347 kb on - strand, within GFF3618 at 131.347 kb on - strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.589 kb on + strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618 at 131.590 kb on - strand, within GFF3618
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 129,232 + GFF3615 0.87 +0.0 129,232 + GFF3615 0.87 +0.4 129,232 + GFF3615 0.87 -0.1 129,232 + GFF3615 0.87 -1.7 129,233 - GFF3615 0.87 -0.8 129,334 + +0.1 129,334 + -1.8 129,334 + -1.0 129,335 - -1.0 129,335 - -0.3 129,335 - +0.2 129,335 - -1.3 129,335 - -0.5 129,364 - +0.2 129,380 + +0.6 129,380 + -0.2 129,380 + -2.3 129,380 + +0.9 129,380 + -0.3 129,380 + -1.0 129,380 + +0.1 129,380 + +0.1 129,380 + +0.1 129,380 + -0.0 129,381 - -0.2 129,381 - -1.6 129,381 - +0.1 129,381 - -0.2 129,381 - -0.7 129,381 - -0.7 129,381 - -0.1 129,425 + +1.0 129,425 + +0.2 129,425 + -0.7 129,428 + -0.2 129,428 + +0.3 129,428 + -1.7 129,428 + +0.6 129,428 + -0.3 129,429 - -0.6 129,429 - -0.6 129,429 - -0.0 129,429 - +0.7 129,429 - +0.1 129,455 + -0.6 129,455 + -0.4 129,455 + -0.3 129,455 + -0.6 129,455 + +0.3 129,455 + -0.3 129,456 - -1.0 129,456 - -1.5 129,456 - -0.4 129,456 - +2.2 129,456 - -0.1 129,456 - -0.8 129,456 - -0.4 129,456 - -0.8 129,520 + GFF3616 0.20 +0.7 129,593 + GFF3616 0.32 +0.7 129,593 + GFF3616 0.32 +0.2 129,881 + GFF3616 0.79 +0.1 129,882 - GFF3616 0.79 +0.1 129,882 - GFF3616 0.79 -0.1 129,890 + GFF3616 0.81 +0.3 129,890 + GFF3616 0.81 -0.7 129,890 + GFF3616 0.81 +0.6 129,890 + GFF3616 0.81 -0.0 129,890 + GFF3616 0.81 -0.5 129,890 + GFF3616 0.81 -0.9 129,890 + GFF3616 0.81 -0.8 129,890 + GFF3616 0.81 +0.3 129,890 + GFF3616 0.81 +0.3 129,890 + GFF3616 0.81 +0.1 129,890 + GFF3616 0.81 -0.5 129,890 + GFF3616 0.81 -0.9 129,890 + GFF3616 0.81 +0.5 129,890 + GFF3616 0.81 +0.6 129,890 + GFF3616 0.81 -0.5 129,891 - GFF3616 0.81 +0.9 129,891 - GFF3616 0.81 -0.3 129,891 - GFF3616 0.81 -0.4 129,891 - GFF3616 0.81 -0.5 129,891 - GFF3616 0.81 -0.6 129,891 - GFF3616 0.81 -0.6 129,891 - GFF3616 0.81 -0.9 129,891 - GFF3616 0.81 +1.1 129,891 - GFF3616 0.81 +0.0 129,935 + GFF3616 0.88 -0.7 129,935 + GFF3616 0.88 -0.5 129,935 + GFF3616 0.88 -0.2 129,935 + GFF3616 0.88 -1.7 129,935 + GFF3616 0.88 +0.7 129,935 + GFF3616 0.88 -0.7 129,935 + GFF3616 0.88 +0.7 129,935 + GFF3616 0.88 -1.1 129,935 + GFF3616 0.88 +0.3 129,935 + GFF3616 0.88 -0.8 129,935 + GFF3616 0.88 -1.1 129,935 + GFF3616 0.88 -0.9 129,935 + GFF3616 0.88 -0.3 129,935 + GFF3616 0.88 +0.3 129,935 + GFF3616 0.88 -0.1 129,936 - GFF3616 0.88 +0.1 129,936 - GFF3616 0.88 +0.3 129,936 - GFF3616 0.88 -0.1 129,936 - GFF3616 0.88 +0.9 129,936 - GFF3616 0.88 +0.1 129,936 - GFF3616 0.88 +0.1 129,936 - GFF3616 0.88 +1.3 129,936 - GFF3616 0.88 +0.2 129,936 - GFF3616 0.88 -0.8 129,936 - GFF3616 0.88 -2.1 129,936 - GFF3616 0.88 -0.1 129,936 - GFF3616 0.88 -1.0 129,936 - GFF3616 0.88 -0.1 129,936 - GFF3616 0.88 +0.4 129,936 - GFF3616 0.88 -1.3 129,936 - GFF3616 0.88 -0.3 129,954 + -0.9 129,954 + -0.5 129,954 + +0.1 129,955 - -0.5 130,044 + -0.0 130,044 + +0.1 130,044 + -1.2 130,044 + -1.1 130,044 + -1.8 130,044 + -0.2 130,044 + +0.1 130,044 + -0.2 130,044 + -0.4 130,044 + +0.7 130,044 + +0.4 130,044 + -0.7 130,044 + -0.0 130,044 + +1.7 130,044 + -0.9 130,044 + -0.8 130,044 + +1.0 130,045 - -0.1 130,045 - +1.0 130,045 - -0.8 130,045 - -2.3 130,045 - +0.3 130,045 - -0.5 130,045 - +3.7 130,045 - +0.4 130,045 - -0.3 130,045 - -0.6 130,045 - -0.2 130,045 - +1.7 130,045 - -0.1 130,045 - -0.1 130,045 - -0.3 130,045 - +0.2 130,045 - +1.1 130,045 - -0.9 130,050 + -0.5 130,050 + -0.8 130,051 - +1.4 130,051 - +1.7 130,110 + -0.9 130,110 + -0.8 130,110 + -0.6 130,110 + -0.2 130,111 - -0.3 130,111 - -2.3 130,111 - -1.0 130,206 + GFF3617 0.21 +0.8 130,206 + GFF3617 0.21 +0.3 130,207 - GFF3617 0.22 -0.2 130,221 + GFF3617 0.24 +1.1 130,221 + GFF3617 0.24 -0.6 130,222 - GFF3617 0.24 -0.3 130,222 - GFF3617 0.24 -0.2 130,222 - GFF3617 0.24 -1.0 130,278 + GFF3617 0.32 +1.2 130,278 + GFF3617 0.32 -0.5 130,278 + GFF3617 0.32 +0.0 130,278 + GFF3617 0.32 -0.8 130,378 - GFF3617 0.47 -0.4 130,413 + GFF3617 0.52 -2.2 130,413 + GFF3617 0.52 +0.4 130,414 - GFF3617 0.52 -0.5 130,483 - GFF3617 0.62 -0.4 130,483 - GFF3617 0.62 -0.5 130,483 - GFF3617 0.62 -0.2 130,485 + GFF3617 0.62 -0.3 130,485 + GFF3617 0.62 +0.1 130,485 + GFF3617 0.62 +0.2 130,486 - GFF3617 0.62 +0.4 130,486 - GFF3617 0.62 -2.0 130,486 - GFF3617 0.62 -0.7 130,486 - GFF3617 0.62 -1.7 130,486 - GFF3617 0.62 -0.2 130,486 - GFF3617 0.62 -1.1 130,486 - GFF3617 0.62 +0.1 130,486 - GFF3617 0.62 -1.6 130,486 - GFF3617 0.62 -1.9 130,486 - GFF3617 0.62 +0.1 130,632 + GFF3617 0.84 -0.7 130,674 + -0.9 130,675 - -0.7 130,675 - -0.3 130,675 - -0.7 130,675 - -0.2 130,675 - -0.4 130,884 + GFF3618 0.11 +0.1 130,884 + GFF3618 0.11 +0.1 130,885 - GFF3618 0.11 +1.3 130,885 - GFF3618 0.11 +0.4 130,917 + GFF3618 0.14 -0.4 130,918 - GFF3618 0.14 +0.3 130,918 - GFF3618 0.14 +0.2 130,918 - GFF3618 0.14 +0.4 130,918 - GFF3618 0.14 +0.1 130,983 + GFF3618 0.22 -1.0 130,983 + GFF3618 0.22 +0.2 130,983 + GFF3618 0.22 -0.9 130,983 + GFF3618 0.22 -2.0 130,983 + GFF3618 0.22 -1.5 130,983 + GFF3618 0.22 -1.0 130,983 + GFF3618 0.22 -0.1 130,983 + GFF3618 0.22 -0.5 130,983 + GFF3618 0.22 +0.5 130,983 + GFF3618 0.22 -0.7 130,984 - GFF3618 0.22 -0.7 130,984 - GFF3618 0.22 +0.0 130,984 - GFF3618 0.22 +0.2 130,984 - GFF3618 0.22 -0.9 130,984 - GFF3618 0.22 -0.7 130,984 - GFF3618 0.22 +0.3 131,184 + GFF3618 0.44 +1.1 131,184 + GFF3618 0.44 +0.3 131,185 - GFF3618 0.44 -0.3 131,343 + GFF3618 0.61 +1.1 131,343 + GFF3618 0.61 +0.3 131,344 - GFF3618 0.61 -1.1 131,344 - GFF3618 0.61 +0.1 131,344 - GFF3618 0.61 -0.5 131,344 - GFF3618 0.61 -2.0 131,346 + GFF3618 0.61 -1.5 131,346 + GFF3618 0.61 +0.2 131,346 + GFF3618 0.61 -0.0 131,346 + GFF3618 0.61 +0.2 131,346 + GFF3618 0.61 -0.2 131,347 - GFF3618 0.62 -0.5 131,347 - GFF3618 0.62 +0.0 131,347 - GFF3618 0.62 +1.7 131,347 - GFF3618 0.62 -0.5 131,589 + GFF3618 0.88 -0.9 131,589 + GFF3618 0.88 -1.3 131,589 + GFF3618 0.88 -0.1 131,589 + GFF3618 0.88 +0.1 131,589 + GFF3618 0.88 -0.4 131,589 + GFF3618 0.88 +0.6 131,589 + GFF3618 0.88 -0.1 131,589 + GFF3618 0.88 -0.7 131,589 + GFF3618 0.88 +1.1 131,589 + GFF3618 0.88 -1.0 131,589 + GFF3618 0.88 -0.0 131,589 + GFF3618 0.88 +0.5 131,589 + GFF3618 0.88 -0.9 131,589 + GFF3618 0.88 -0.1 131,589 + GFF3618 0.88 -0.3 131,589 + GFF3618 0.88 -2.3 131,589 + GFF3618 0.88 -0.3 131,590 - GFF3618 0.88 -0.2 131,590 - GFF3618 0.88 -1.0 131,590 - GFF3618 0.88 -0.6 131,590 - GFF3618 0.88 +0.1 131,590 - GFF3618 0.88 +0.9 131,590 - GFF3618 0.88 -0.4 131,590 - GFF3618 0.88 +0.6 131,590 - GFF3618 0.88 +0.7 131,590 - GFF3618 0.88 -0.6 131,590 - GFF3618 0.88 +0.2 131,590 - GFF3618 0.88 -0.3 131,590 - GFF3618 0.88 -0.7
Or see this region's nucleotide sequence