Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3580 and GFF3581 are separated by 82 nucleotides GFF3581 and GFF3582 are separated by 31 nucleotides GFF3582 and GFF3583 are separated by 107 nucleotides
GFF3580 - COG2124: Cytochrome P450, at 91,161 to 92,330
GFF3580
GFF3581 - Transcriptional regulator, ArsR family, at 92,413 to 93,105
GFF3581
GFF3582 - Tripartite tricarboxylate transporter TctC family, at 93,137 to 94,147
GFF3582
GFF3583 - AMP nucleosidase (EC 3.2.2.4), at 94,255 to 95,772
GFF3583
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.245 kb on + strand at 92.245 kb on + strand at 92.246 kb on - strand at 92.246 kb on - strand at 92.254 kb on + strand at 92.401 kb on + strand at 92.402 kb on - strand at 92.765 kb on - strand, within GFF3581 at 92.765 kb on - strand, within GFF3581 at 92.765 kb on - strand, within GFF3581 at 92.765 kb on - strand, within GFF3581 at 93.159 kb on + strand at 93.159 kb on + strand at 93.160 kb on - strand at 93.160 kb on - strand at 93.160 kb on - strand at 93.160 kb on - strand at 93.160 kb on - strand at 93.228 kb on + strand at 93.552 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.600 kb on + strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.601 kb on - strand, within GFF3582 at 93.643 kb on + strand, within GFF3582 at 93.644 kb on - strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.846 kb on + strand, within GFF3582 at 93.847 kb on - strand, within GFF3582 at 93.847 kb on - strand, within GFF3582 at 93.847 kb on - strand, within GFF3582 at 93.847 kb on - strand, within GFF3582 at 93.847 kb on - strand, within GFF3582 at 93.858 kb on + strand, within GFF3582 at 93.859 kb on - strand, within GFF3582 at 93.903 kb on + strand, within GFF3582 at 93.903 kb on + strand, within GFF3582 at 94.126 kb on + strand at 94.127 kb on - strand at 94.256 kb on + strand at 94.256 kb on + strand at 94.257 kb on - strand at 94.379 kb on + strand at 94.705 kb on + strand, within GFF3583 at 94.745 kb on + strand, within GFF3583 at 94.745 kb on + strand, within GFF3583 at 94.746 kb on - strand, within GFF3583 at 94.746 kb on - strand, within GFF3583 at 94.763 kb on + strand, within GFF3583 at 94.763 kb on + strand, within GFF3583 at 94.763 kb on + strand, within GFF3583 at 94.763 kb on + strand, within GFF3583 at 94.763 kb on + strand, within GFF3583 at 94.764 kb on - strand, within GFF3583 at 94.764 kb on - strand, within GFF3583 at 94.928 kb on + strand, within GFF3583 at 94.929 kb on - strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.120 kb on + strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.129 kb on + strand, within GFF3583 at 95.130 kb on - strand, within GFF3583
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 92,245 + -0.3 92,245 + +0.8 92,246 - -2.7 92,246 - +0.5 92,254 + -0.5 92,401 + -0.3 92,402 - -0.4 92,765 - GFF3581 0.51 -0.0 92,765 - GFF3581 0.51 +1.2 92,765 - GFF3581 0.51 +0.1 92,765 - GFF3581 0.51 -0.4 93,159 + -0.7 93,159 + -0.4 93,160 - -0.2 93,160 - -0.3 93,160 - -0.2 93,160 - -2.2 93,160 - -0.4 93,228 + +0.4 93,552 + GFF3582 0.41 -0.3 93,600 + GFF3582 0.46 +0.2 93,600 + GFF3582 0.46 +0.7 93,600 + GFF3582 0.46 -1.1 93,600 + GFF3582 0.46 -2.0 93,600 + GFF3582 0.46 -0.2 93,600 + GFF3582 0.46 +1.4 93,600 + GFF3582 0.46 -0.9 93,600 + GFF3582 0.46 -0.1 93,600 + GFF3582 0.46 -0.2 93,600 + GFF3582 0.46 -0.1 93,601 - GFF3582 0.46 -0.1 93,601 - GFF3582 0.46 -0.9 93,601 - GFF3582 0.46 -0.4 93,601 - GFF3582 0.46 -0.4 93,601 - GFF3582 0.46 +0.2 93,601 - GFF3582 0.46 -0.1 93,643 + GFF3582 0.50 -1.2 93,644 - GFF3582 0.50 -1.4 93,846 + GFF3582 0.70 -1.2 93,846 + GFF3582 0.70 -0.3 93,846 + GFF3582 0.70 -0.3 93,846 + GFF3582 0.70 -0.1 93,846 + GFF3582 0.70 -0.4 93,846 + GFF3582 0.70 -0.1 93,847 - GFF3582 0.70 -0.1 93,847 - GFF3582 0.70 -0.0 93,847 - GFF3582 0.70 +0.1 93,847 - GFF3582 0.70 -0.5 93,847 - GFF3582 0.70 -0.3 93,858 + GFF3582 0.71 -0.6 93,859 - GFF3582 0.71 -0.5 93,903 + GFF3582 0.76 -1.5 93,903 + GFF3582 0.76 +0.1 94,126 + -1.8 94,127 - -0.8 94,256 + -0.9 94,256 + -0.7 94,257 - -0.1 94,379 + +0.1 94,705 + GFF3583 0.30 -0.3 94,745 + GFF3583 0.32 +2.4 94,745 + GFF3583 0.32 -1.1 94,746 - GFF3583 0.32 +0.3 94,746 - GFF3583 0.32 -0.5 94,763 + GFF3583 0.33 -0.9 94,763 + GFF3583 0.33 -0.9 94,763 + GFF3583 0.33 -0.1 94,763 + GFF3583 0.33 -0.3 94,763 + GFF3583 0.33 +0.9 94,764 - GFF3583 0.34 +1.1 94,764 - GFF3583 0.34 -0.1 94,928 + GFF3583 0.44 -1.0 94,929 - GFF3583 0.44 +0.1 95,063 + GFF3583 0.53 -1.1 95,063 + GFF3583 0.53 +1.0 95,063 + GFF3583 0.53 +0.6 95,064 - GFF3583 0.53 +0.0 95,064 - GFF3583 0.53 +0.5 95,064 - GFF3583 0.53 -0.5 95,064 - GFF3583 0.53 -0.9 95,120 + GFF3583 0.57 -1.2 95,121 - GFF3583 0.57 -0.9 95,121 - GFF3583 0.57 -0.2 95,121 - GFF3583 0.57 -1.9 95,129 + GFF3583 0.58 +1.7 95,130 - GFF3583 0.58 +0.5
Or see this region's nucleotide sequence