Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3457 and GFF3458 overlap by 4 nucleotides GFF3458 and GFF3459 overlap by 4 nucleotides
GFF3457 - Nitric oxide reductase activation protein NorD, at 278,745 to 280,397
GFF3457
GFF3458 - Rubisco activation protein CbbQ, at 280,394 to 281,212
GFF3458
GFF3459 - Aliphatic amidase AmiE (EC 3.5.1.4), at 281,209 to 282,246
GFF3459
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.817 kb on + strand, within GFF3457 at 279.818 kb on - strand, within GFF3457 at 279.895 kb on + strand, within GFF3457 at 279.896 kb on - strand, within GFF3457 at 280.525 kb on - strand, within GFF3458 at 280.752 kb on + strand, within GFF3458 at 280.753 kb on - strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.890 kb on + strand, within GFF3458 at 281.483 kb on + strand, within GFF3459 at 281.562 kb on - strand, within GFF3459 at 281.562 kb on - strand, within GFF3459 at 281.607 kb on - strand, within GFF3459 at 281.666 kb on + strand, within GFF3459 at 281.673 kb on - strand, within GFF3459 at 281.673 kb on - strand, within GFF3459 at 281.795 kb on + strand, within GFF3459 at 281.796 kb on - strand, within GFF3459 at 281.796 kb on - strand, within GFF3459 at 281.900 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.029 kb on + strand, within GFF3459 at 282.030 kb on - strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.047 kb on + strand, within GFF3459 at 282.048 kb on - strand, within GFF3459
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 279,781 + GFF3457 0.63 +0.4 279,781 + GFF3457 0.63 -0.7 279,781 + GFF3457 0.63 -0.9 279,782 - GFF3457 0.63 +0.4 279,782 - GFF3457 0.63 +0.1 279,817 + GFF3457 0.65 -0.8 279,818 - GFF3457 0.65 -1.5 279,895 + GFF3457 0.70 +0.3 279,896 - GFF3457 0.70 -1.2 280,525 - GFF3458 0.16 -0.7 280,752 + GFF3458 0.44 -0.5 280,753 - GFF3458 0.44 -0.8 280,817 + GFF3458 0.52 +0.0 280,817 + GFF3458 0.52 -0.3 280,817 + GFF3458 0.52 -1.6 280,890 + GFF3458 0.61 -1.1 281,483 + GFF3459 0.26 -1.9 281,562 - GFF3459 0.34 +1.0 281,562 - GFF3459 0.34 -0.3 281,607 - GFF3459 0.38 +0.5 281,666 + GFF3459 0.44 -0.5 281,673 - GFF3459 0.45 -0.3 281,673 - GFF3459 0.45 -1.7 281,795 + GFF3459 0.56 +1.1 281,796 - GFF3459 0.57 -0.0 281,796 - GFF3459 0.57 +0.9 281,900 + GFF3459 0.67 +0.2 282,029 + GFF3459 0.79 +0.0 282,029 + GFF3459 0.79 +0.7 282,029 + GFF3459 0.79 +0.6 282,030 - GFF3459 0.79 +1.1 282,047 + GFF3459 0.81 -1.1 282,047 + GFF3459 0.81 +1.2 282,047 + GFF3459 0.81 -1.1 282,047 + GFF3459 0.81 -0.4 282,048 - GFF3459 0.81 -0.1
Or see this region's nucleotide sequence