Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3233 and GFF3234 are separated by 1 nucleotides GFF3234 and GFF3235 are separated by 55 nucleotides GFF3235 and GFF3236 overlap by 1 nucleotides GFF3236 and GFF3237 overlap by 4 nucleotides GFF3237 and GFF3238 overlap by 4 nucleotides GFF3238 and GFF3239 overlap by 4 nucleotides GFF3239 and GFF3240 are separated by 11 nucleotides
GFF3233 - hypothetical protein, at 51,875 to 52,627
GFF3233
GFF3234 - no description, at 52,629 to 52,748
GFF3234
GFF3235 - no description, at 52,804 to 53,175
GFF3235
GFF3236 - no description, at 53,175 to 53,573
GFF3236
GFF3237 - no description, at 53,570 to 53,809
GFF3237
GFF3238 - no description, at 53,806 to 54,216
GFF3238
GFF3239 - no description, at 54,213 to 54,605
GFF3239
GFF3240 - hypothetical protein, at 54,617 to 55,237
GFF3240
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 52.789 kb on - strand at 52.821 kb on - strand at 52.949 kb on - strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.203 kb on + strand at 53.203 kb on + strand at 53.204 kb on - strand at 53.204 kb on - strand at 53.514 kb on + strand, within GFF3236 at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.717 kb on + strand, within GFF3237 at 53.958 kb on + strand, within GFF3238 at 53.959 kb on - strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.110 kb on - strand, within GFF3238 at 54.110 kb on - strand, within GFF3238 at 54.196 kb on + strand at 54.197 kb on - strand at 54.426 kb on + strand, within GFF3239 at 54.426 kb on + strand, within GFF3239 at 54.427 kb on - strand, within GFF3239 at 54.429 kb on + strand, within GFF3239 at 54.472 kb on - strand, within GFF3239 at 54.472 kb on - strand, within GFF3239
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 52,789 - +0.6 52,821 - -0.6 52,949 - GFF3235 0.39 +1.7 53,115 + GFF3235 0.84 -0.1 53,115 + GFF3235 0.84 +0.5 53,115 + GFF3235 0.84 +0.2 53,115 + GFF3235 0.84 +0.0 53,115 + GFF3235 0.84 -0.5 53,115 + GFF3235 0.84 -0.7 53,116 - GFF3235 0.84 -1.2 53,116 - GFF3235 0.84 -1.4 53,116 - GFF3235 0.84 +0.9 53,116 - GFF3235 0.84 -1.4 53,116 - GFF3235 0.84 -0.2 53,116 - GFF3235 0.84 -0.2 53,116 - GFF3235 0.84 +1.2 53,203 + +0.2 53,203 + +1.1 53,204 - -0.3 53,204 - -0.8 53,514 + GFF3236 0.85 +0.4 53,591 + -1.2 53,591 + -0.1 53,591 + +1.3 53,591 + +0.1 53,591 + +0.7 53,592 - -0.8 53,592 - +0.2 53,592 - -2.2 53,592 - -0.4 53,592 - -1.0 53,717 + GFF3237 0.61 -1.0 53,958 + GFF3238 0.37 -0.6 53,959 - GFF3238 0.37 -0.5 54,109 + GFF3238 0.74 -0.2 54,109 + GFF3238 0.74 -1.0 54,109 + GFF3238 0.74 -0.5 54,109 + GFF3238 0.74 -0.2 54,110 - GFF3238 0.74 -0.1 54,110 - GFF3238 0.74 +0.1 54,196 + -1.0 54,197 - +1.4 54,426 + GFF3239 0.54 -1.1 54,426 + GFF3239 0.54 +0.2 54,427 - GFF3239 0.54 -1.0 54,429 + GFF3239 0.55 -0.7 54,472 - GFF3239 0.66 +0.0 54,472 - GFF3239 0.66 -0.4
Or see this region's nucleotide sequence