Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3164 and GFF3165 overlap by 4 nucleotides GFF3165 and GFF3166 are separated by 111 nucleotides GFF3166 and GFF3167 overlap by 4 nucleotides
GFF3164 - Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2), at 603,152 to 604,135
GFF3164
GFF3165 - Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2), at 604,132 to 605,868
GFF3165
GFF3166 - Transcriptional regulator, IclR family, at 605,980 to 606,780
GFF3166
GFF3167 - BUG/TctC family periplasmic protein, at 606,777 to 607,763
GFF3167
Position (kb) 604
605
606 Strain fitness (log2 ratio) -1
0
1 at 603.281 kb on + strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.654 kb on - strand, within GFF3164 at 603.732 kb on - strand, within GFF3164 at 603.798 kb on - strand, within GFF3164 at 604.966 kb on + strand, within GFF3165 at 604.966 kb on + strand, within GFF3165 at 605.219 kb on + strand, within GFF3165 at 605.770 kb on + strand at 605.771 kb on - strand at 605.876 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 606.308 kb on - strand, within GFF3166 at 606.347 kb on - strand, within GFF3166
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 603,281 + GFF3164 0.13 -0.3 603,282 - GFF3164 0.13 -1.7 603,282 - GFF3164 0.13 +0.1 603,569 + GFF3164 0.42 -0.8 603,569 + GFF3164 0.42 -0.1 603,654 - GFF3164 0.51 -1.6 603,732 - GFF3164 0.59 +0.0 603,798 - GFF3164 0.66 +0.1 604,966 + GFF3165 0.48 -0.1 604,966 + GFF3165 0.48 -0.1 605,219 + GFF3165 0.63 +0.4 605,770 + -0.4 605,771 - +1.0 605,876 - +0.2 605,882 - -0.1 605,882 - -0.6 605,882 - -1.5 605,882 - -0.5 605,923 - -1.6 605,923 - -1.2 605,923 - -1.1 605,923 - +0.5 606,308 - GFF3166 0.41 -0.4 606,347 - GFF3166 0.46 +0.5
Or see this region's nucleotide sequence