Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3099 and GFF3100 are separated by 10 nucleotides GFF3100 and GFF3101 are separated by 114 nucleotides GFF3101 and GFF3102 are separated by 9 nucleotides GFF3102 and GFF3103 are separated by 44 nucleotides
GFF3099 - UPF0234 protein Yitk, at 528,648 to 529,133
GFF3099
GFF3100 - Aspartyl protease, at 529,144 to 529,788
GFF3100
GFF3101 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 529,903 to 530,256
GFF3101
GFF3102 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY (EC 2.3.1.n3), at 530,266 to 530,904
GFF3102
GFF3103 - Cys-tRNA(Pro) deacylase YbaK, at 530,949 to 531,443
GFF3103
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.118 kb on + strand at 529.567 kb on + strand, within GFF3100 at 529.567 kb on + strand, within GFF3100 at 529.567 kb on + strand, within GFF3100 at 529.567 kb on + strand, within GFF3100 at 529.567 kb on + strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.568 kb on - strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.666 kb on + strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.667 kb on - strand, within GFF3100 at 529.940 kb on + strand, within GFF3101 at 529.941 kb on - strand, within GFF3101 at 529.941 kb on - strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.057 kb on - strand, within GFF3101 at 530.057 kb on - strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.950 kb on + strand at 530.951 kb on - strand at 530.951 kb on - strand at 531.026 kb on - strand, within GFF3103 at 531.026 kb on - strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.137 kb on - strand, within GFF3103
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 529,118 + -0.2 529,567 + GFF3100 0.66 -0.4 529,567 + GFF3100 0.66 +0.4 529,567 + GFF3100 0.66 +0.1 529,567 + GFF3100 0.66 +0.8 529,567 + GFF3100 0.66 +0.0 529,568 - GFF3100 0.66 -1.0 529,568 - GFF3100 0.66 -0.8 529,568 - GFF3100 0.66 -1.5 529,568 - GFF3100 0.66 -0.8 529,568 - GFF3100 0.66 -0.3 529,568 - GFF3100 0.66 +0.7 529,568 - GFF3100 0.66 +0.9 529,568 - GFF3100 0.66 -0.2 529,568 - GFF3100 0.66 -0.1 529,568 - GFF3100 0.66 -1.2 529,666 + GFF3100 0.81 -0.8 529,666 + GFF3100 0.81 +0.3 529,666 + GFF3100 0.81 +0.4 529,666 + GFF3100 0.81 +0.5 529,666 + GFF3100 0.81 +0.5 529,666 + GFF3100 0.81 +0.3 529,666 + GFF3100 0.81 -0.3 529,666 + GFF3100 0.81 +0.7 529,666 + GFF3100 0.81 +0.5 529,666 + GFF3100 0.81 +0.4 529,667 - GFF3100 0.81 -0.0 529,667 - GFF3100 0.81 -1.6 529,667 - GFF3100 0.81 +0.0 529,667 - GFF3100 0.81 -0.1 529,667 - GFF3100 0.81 -0.3 529,667 - GFF3100 0.81 +0.5 529,667 - GFF3100 0.81 -0.1 529,667 - GFF3100 0.81 +0.6 529,667 - GFF3100 0.81 -1.2 529,667 - GFF3100 0.81 +2.5 529,940 + GFF3101 0.10 +1.8 529,941 - GFF3101 0.11 -1.1 529,941 - GFF3101 0.11 -2.3 530,056 + GFF3101 0.43 -1.3 530,056 + GFF3101 0.43 -0.6 530,056 + GFF3101 0.43 -0.9 530,056 + GFF3101 0.43 +1.5 530,056 + GFF3101 0.43 +1.1 530,056 + GFF3101 0.43 -0.9 530,057 - GFF3101 0.44 +0.6 530,057 - GFF3101 0.44 -0.1 530,186 + GFF3101 0.80 -1.8 530,186 + GFF3101 0.80 +0.1 530,186 + GFF3101 0.80 +0.1 530,186 + GFF3101 0.80 -0.3 530,187 - GFF3101 0.80 -1.1 530,187 - GFF3101 0.80 -0.6 530,187 - GFF3101 0.80 +0.8 530,187 - GFF3101 0.80 -2.3 530,187 - GFF3101 0.80 -0.6 530,187 - GFF3101 0.80 -0.6 530,187 - GFF3101 0.80 -0.2 530,187 - GFF3101 0.80 +1.9 530,187 - GFF3101 0.80 -0.7 530,187 - GFF3101 0.80 +0.9 530,187 - GFF3101 0.80 +0.7 530,187 - GFF3101 0.80 +0.4 530,950 + -0.7 530,951 - +0.1 530,951 - -0.3 531,026 - GFF3103 0.16 -0.6 531,026 - GFF3103 0.16 -3.2 531,085 + GFF3103 0.27 -0.6 531,085 + GFF3103 0.27 +1.5 531,085 + GFF3103 0.27 +0.2 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 -2.5 531,085 + GFF3103 0.27 -0.5 531,085 + GFF3103 0.27 +0.5 531,085 + GFF3103 0.27 +0.2 531,085 + GFF3103 0.27 -0.9 531,085 + GFF3103 0.27 -0.5 531,086 - GFF3103 0.28 +1.2 531,086 - GFF3103 0.28 -0.8 531,086 - GFF3103 0.28 +1.3 531,086 - GFF3103 0.28 +0.2 531,086 - GFF3103 0.28 +0.9 531,086 - GFF3103 0.28 -1.2 531,086 - GFF3103 0.28 +1.3 531,086 - GFF3103 0.28 +0.2 531,086 - GFF3103 0.28 +0.7 531,086 - GFF3103 0.28 +0.5 531,086 - GFF3103 0.28 +0.3 531,086 - GFF3103 0.28 -0.4 531,136 + GFF3103 0.38 +0.2 531,136 + GFF3103 0.38 -1.1 531,136 + GFF3103 0.38 +1.0 531,137 - GFF3103 0.38 -0.2
Or see this region's nucleotide sequence