Strain Fitness in Variovorax sp. SCN45 around GFF2904

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2902 and GFF2904 are separated by 106 nucleotidesGFF2904 and GFF2905 are separated by 213 nucleotides GFF2902 - ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes), at 328,333 to 329,859 GFF2902 GFF2904 - hypothetical protein, at 329,966 to 330,697 GFF2904 GFF2905 - surface antigen gene, at 330,911 to 332,317 GFF2905 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.008 kb on + strand, within GFF2902at 329.008 kb on + strand, within GFF2902at 329.009 kb on - strand, within GFF2902at 329.009 kb on - strand, within GFF2902at 329.020 kb on + strand, within GFF2902at 329.021 kb on - strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.039 kb on - strand, within GFF2902at 329.039 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.402 kb on + strand, within GFF2902at 329.402 kb on + strand, within GFF2902at 329.403 kb on - strand, within GFF2902at 329.486 kb on - strand, within GFF2902at 329.486 kb on - strand, within GFF2902at 329.858 kb on - strandat 329.858 kb on - strandat 329.919 kb on + strandat 329.920 kb on - strandat 329.998 kb on - strandat 329.998 kb on - strandat 330.072 kb on - strand, within GFF2904at 330.119 kb on + strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.170 kb on + strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.392 kb on + strand, within GFF2904at 330.425 kb on + strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.695 kb on + strandat 330.794 kb on - strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.800 kb on - strandat 330.800 kb on - strandat 330.803 kb on + strandat 330.804 kb on - strandat 331.070 kb on + strand, within GFF2905at 331.070 kb on + strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.203 kb on - strand, within GFF2905at 331.328 kb on + strand, within GFF2905at 331.328 kb on + strand, within GFF2905at 331.329 kb on - strand, within GFF2905at 331.329 kb on - strand, within GFF2905at 331.364 kb on + strand, within GFF2905at 331.472 kb on + strand, within GFF2905at 331.472 kb on + strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.616 kb on + strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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329,008 + GFF2902 0.44 -0.3
329,008 + GFF2902 0.44 +1.1
329,009 - GFF2902 0.44 -0.0
329,009 - GFF2902 0.44 -0.2
329,020 + GFF2902 0.45 -0.7
329,021 - GFF2902 0.45 -1.0
329,038 + GFF2902 0.46 +0.1
329,038 + GFF2902 0.46 +1.1
329,038 + GFF2902 0.46 -0.3
329,038 + GFF2902 0.46 -0.8
329,039 - GFF2902 0.46 +0.9
329,039 - GFF2902 0.46 -0.3
329,313 - GFF2902 0.64 -0.5
329,313 - GFF2902 0.64 -0.5
329,313 - GFF2902 0.64 -0.3
329,402 + GFF2902 0.70 +0.1
329,402 + GFF2902 0.70 -1.1
329,403 - GFF2902 0.70 +1.3
329,486 - GFF2902 0.76 +1.0
329,486 - GFF2902 0.76 -0.1
329,858 - +0.1
329,858 - +0.1
329,919 + -0.1
329,920 - +0.1
329,998 - +0.7
329,998 - +1.1
330,072 - GFF2904 0.14 -0.4
330,119 + GFF2904 0.21 -0.8
330,120 - GFF2904 0.21 -1.0
330,120 - GFF2904 0.21 -0.5
330,120 - GFF2904 0.21 -0.2
330,120 - GFF2904 0.21 -3.1
330,158 + GFF2904 0.26 +0.5
330,158 + GFF2904 0.26 -0.1
330,158 + GFF2904 0.26 -0.3
330,158 + GFF2904 0.26 +0.7
330,158 + GFF2904 0.26 -0.4
330,158 + GFF2904 0.26 -1.5
330,158 + GFF2904 0.26 -0.6
330,159 - GFF2904 0.26 -0.8
330,159 - GFF2904 0.26 -1.1
330,170 + GFF2904 0.28 +0.2
330,171 - GFF2904 0.28 +1.1
330,171 - GFF2904 0.28 -1.1
330,392 + GFF2904 0.58 +0.3
330,425 + GFF2904 0.63 +0.6
330,555 - GFF2904 0.80 -0.3
330,555 - GFF2904 0.80 +0.1
330,695 + +0.4
330,794 - -0.6
330,799 + -0.8
330,799 + +0.3
330,799 + +1.0
330,799 + -0.1
330,800 - -0.9
330,800 - -0.5
330,803 + -2.9
330,804 - +0.1
331,070 + GFF2905 0.11 +0.1
331,070 + GFF2905 0.11 -0.3
331,071 - GFF2905 0.11 -0.6
331,071 - GFF2905 0.11 -1.7
331,071 - GFF2905 0.11 +0.7
331,071 - GFF2905 0.11 -0.9
331,071 - GFF2905 0.11 +2.5
331,203 - GFF2905 0.21 -0.0
331,328 + GFF2905 0.30 -0.1
331,328 + GFF2905 0.30 -2.5
331,329 - GFF2905 0.30 -0.6
331,329 - GFF2905 0.30 -1.6
331,364 + GFF2905 0.32 +1.3
331,472 + GFF2905 0.40 +0.1
331,472 + GFF2905 0.40 -1.2
331,473 - GFF2905 0.40 -0.4
331,473 - GFF2905 0.40 -0.6
331,473 - GFF2905 0.40 -0.8
331,616 + GFF2905 0.50 +0.5
331,617 - GFF2905 0.50 -1.3
331,617 - GFF2905 0.50 +0.5
331,617 - GFF2905 0.50 +1.5
331,617 - GFF2905 0.50 -1.1

Or see this region's nucleotide sequence