Strain Fitness in Variovorax sp. SCN45 around GFF2862

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2860 and GFF2861 are separated by 153 nucleotidesGFF2861 and GFF2862 are separated by 119 nucleotidesGFF2862 and GFF2863 are separated by 6 nucleotidesGFF2863 and GFF2864 are separated by 8 nucleotides GFF2860 - FIG00974036: hypothetical protein, at 283,995 to 285,065 GFF2860 GFF2861 - Translation elongation factor P, at 285,219 to 285,773 GFF2861 GFF2862 - FIG01199081: hypothetical protein, at 285,893 to 286,756 GFF2862 GFF2863 - no description, at 286,763 to 287,440 GFF2863 GFF2864 - no description, at 287,449 to 287,967 GFF2864 Position (kb) 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.063 kb on + strandat 285.063 kb on + strandat 285.064 kb on - strandat 285.064 kb on - strandat 285.068 kb on + strandat 285.068 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.142 kb on + strandat 285.169 kb on + strandat 285.169 kb on + strandat 285.169 kb on + strandat 285.169 kb on + strandat 285.218 kb on + strandat 285.218 kb on + strandat 286.238 kb on + strand, within GFF2862at 286.238 kb on + strand, within GFF2862at 286.238 kb on + strand, within GFF2862at 286.238 kb on + strand, within GFF2862at 286.238 kb on + strand, within GFF2862at 286.239 kb on - strand, within GFF2862at 286.239 kb on - strand, within GFF2862at 286.239 kb on - strand, within GFF2862at 286.239 kb on - strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.241 kb on + strand, within GFF2862at 286.242 kb on - strand, within GFF2862at 286.242 kb on - strand, within GFF2862at 286.242 kb on - strand, within GFF2862at 286.242 kb on - strand, within GFF2862at 286.242 kb on - strand, within GFF2862at 286.280 kb on + strand, within GFF2862at 286.280 kb on + strand, within GFF2862at 286.280 kb on + strand, within GFF2862at 286.281 kb on - strand, within GFF2862at 286.281 kb on - strand, within GFF2862at 286.281 kb on - strand, within GFF2862at 286.281 kb on - strand, within GFF2862at 286.433 kb on + strand, within GFF2862at 286.433 kb on + strand, within GFF2862at 286.433 kb on + strand, within GFF2862at 286.434 kb on - strand, within GFF2862at 286.434 kb on - strand, within GFF2862at 286.434 kb on - strand, within GFF2862at 286.434 kb on - strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.700 kb on + strandat 286.700 kb on + strandat 286.700 kb on + strandat 286.701 kb on - strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.746 kb on - strandat 286.746 kb on - strandat 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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285,063 + -0.8
285,063 + -2.2
285,064 - +0.1
285,064 - +0.3
285,068 + -0.3
285,068 + -0.8
285,142 + -1.8
285,142 + -0.4
285,142 + -0.9
285,142 + -1.7
285,142 + +0.0
285,142 + -1.7
285,142 + -1.0
285,142 + -2.4
285,142 + +1.4
285,169 + -1.8
285,169 + +0.6
285,169 + +0.8
285,169 + +0.1
285,218 + -0.4
285,218 + -0.6
286,238 + GFF2862 0.40 -0.5
286,238 + GFF2862 0.40 -0.2
286,238 + GFF2862 0.40 +1.1
286,238 + GFF2862 0.40 -0.0
286,238 + GFF2862 0.40 -0.1
286,239 - GFF2862 0.40 +0.0
286,239 - GFF2862 0.40 -1.9
286,239 - GFF2862 0.40 -0.4
286,239 - GFF2862 0.40 +0.7
286,241 + GFF2862 0.40 -1.6
286,241 + GFF2862 0.40 +0.9
286,241 + GFF2862 0.40 -2.9
286,241 + GFF2862 0.40 -0.1
286,241 + GFF2862 0.40 +0.3
286,241 + GFF2862 0.40 -0.6
286,242 - GFF2862 0.40 -0.4
286,242 - GFF2862 0.40 -0.7
286,242 - GFF2862 0.40 -0.5
286,242 - GFF2862 0.40 -0.2
286,242 - GFF2862 0.40 -0.6
286,280 + GFF2862 0.45 -0.5
286,280 + GFF2862 0.45 +0.3
286,280 + GFF2862 0.45 -0.8
286,281 - GFF2862 0.45 -0.9
286,281 - GFF2862 0.45 -1.1
286,281 - GFF2862 0.45 -0.8
286,281 - GFF2862 0.45 -1.7
286,433 + GFF2862 0.62 -0.4
286,433 + GFF2862 0.62 -0.3
286,433 + GFF2862 0.62 -0.1
286,434 - GFF2862 0.63 -0.4
286,434 - GFF2862 0.63 -0.1
286,434 - GFF2862 0.63 +0.1
286,434 - GFF2862 0.63 -0.5
286,466 + GFF2862 0.66 -0.3
286,466 + GFF2862 0.66 -0.1
286,466 + GFF2862 0.66 +0.5
286,466 + GFF2862 0.66 +0.2
286,467 - GFF2862 0.66 -1.2
286,467 - GFF2862 0.66 -0.6
286,467 - GFF2862 0.66 -1.8
286,623 - GFF2862 0.84 -0.2
286,623 - GFF2862 0.84 -1.2
286,623 - GFF2862 0.84 +0.5
286,623 - GFF2862 0.84 -0.1
286,700 + -0.6
286,700 + -0.3
286,700 + -0.8
286,701 - -0.4
286,745 + -1.5
286,745 + +0.1
286,745 + -0.8
286,745 + -0.1
286,745 + -0.7
286,746 - +0.7
286,746 - -0.2
287,031 + GFF2863 0.40 +1.5
287,031 + GFF2863 0.40 +0.8
287,031 + GFF2863 0.40 +0.2
287,031 + GFF2863 0.40 -0.3
287,073 + GFF2863 0.46 +0.9
287,073 + GFF2863 0.46 -0.8
287,073 + GFF2863 0.46 +0.1
287,073 + GFF2863 0.46 -0.9
287,073 + GFF2863 0.46 -0.6
287,073 + GFF2863 0.46 +2.1
287,073 + GFF2863 0.46 +1.5
287,073 + GFF2863 0.46 -0.5
287,074 - GFF2863 0.46 -0.3
287,074 - GFF2863 0.46 -1.1
287,074 - GFF2863 0.46 -1.0
287,074 - GFF2863 0.46 +1.4
287,074 - GFF2863 0.46 -0.5
287,074 - GFF2863 0.46 +0.4
287,074 - GFF2863 0.46 -0.3
287,074 - GFF2863 0.46 -1.1
287,074 - GFF2863 0.46 +0.2
287,223 + GFF2863 0.68 -3.0
287,223 + GFF2863 0.68 -0.6
287,223 + GFF2863 0.68 +1.5
287,223 + GFF2863 0.68 -1.4
287,223 + GFF2863 0.68 -0.7
287,223 + GFF2863 0.68 -0.7
287,224 - GFF2863 0.68 +0.5
287,224 - GFF2863 0.68 -0.3
287,224 - GFF2863 0.68 -1.0
287,229 + GFF2863 0.69 -1.3
287,229 + GFF2863 0.69 +0.1
287,229 + GFF2863 0.69 +1.3
287,229 + GFF2863 0.69 +0.3
287,229 + GFF2863 0.69 +0.6
287,229 + GFF2863 0.69 -0.8
287,229 + GFF2863 0.69 +0.3
287,229 + GFF2863 0.69 -0.2
287,229 + GFF2863 0.69 -0.1
287,229 + GFF2863 0.69 -0.4
287,229 + GFF2863 0.69 +0.0
287,229 + GFF2863 0.69 -0.3
287,229 + GFF2863 0.69 -0.3
287,229 + GFF2863 0.69 -1.5
287,229 + GFF2863 0.69 +0.5
287,229 + GFF2863 0.69 +0.3
287,229 + GFF2863 0.69 +0.4
287,230 - GFF2863 0.69 -0.5
287,230 - GFF2863 0.69 -1.5
287,230 - GFF2863 0.69 +0.4
287,230 - GFF2863 0.69 +0.2
287,230 - GFF2863 0.69 -0.6
287,230 - GFF2863 0.69 +0.0
287,230 - GFF2863 0.69 +0.8
287,230 - GFF2863 0.69 -0.5
287,230 - GFF2863 0.69 -1.4
287,230 - GFF2863 0.69 -0.5
287,230 - GFF2863 0.69 +0.1
287,230 - GFF2863 0.69 +1.2
287,230 - GFF2863 0.69 +0.7
287,230 - GFF2863 0.69 -0.8
287,230 - GFF2863 0.69 -0.5
287,230 - GFF2863 0.69 +1.2
287,230 - GFF2863 0.69 -0.1
287,230 - GFF2863 0.69 +0.2
287,230 - GFF2863 0.69 +0.1
287,230 - GFF2863 0.69 +0.0
287,230 - GFF2863 0.69 -1.7
287,230 - GFF2863 0.69 +0.3
287,230 - GFF2863 0.69 -0.5
287,603 - GFF2864 0.30 -0.1
287,603 - GFF2864 0.30 -0.3
287,603 - GFF2864 0.30 +2.1
287,603 - GFF2864 0.30 +0.1
287,603 - GFF2864 0.30 -0.9
287,664 + GFF2864 0.41 -0.5
287,664 + GFF2864 0.41 +0.6
287,664 + GFF2864 0.41 -0.1
287,664 + GFF2864 0.41 -0.1
287,664 + GFF2864 0.41 +2.0
287,664 + GFF2864 0.41 -0.5
287,664 + GFF2864 0.41 +0.0
287,664 + GFF2864 0.41 -0.5
287,664 + GFF2864 0.41 +0.9
287,664 + GFF2864 0.41 -1.9
287,664 + GFF2864 0.41 -0.4
287,664 + GFF2864 0.41 +0.1
287,665 - GFF2864 0.42 +1.5
287,665 - GFF2864 0.42 +0.3
287,665 - GFF2864 0.42 -0.4
287,665 - GFF2864 0.42 +0.9

Or see this region's nucleotide sequence