Strain Fitness in Variovorax sp. SCN45 around GFF265

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF264 and GFF265 are separated by 103 nucleotidesGFF265 and GFF266 are separated by 10 nucleotides GFF264 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 296,070 to 297,680 GFF264 GFF265 - RND efflux system, membrane fusion protein, at 297,784 to 298,941 GFF265 GFF266 - RND efflux system, inner membrane transporter, at 298,952 to 302,038 GFF266 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 297.123 kb on + strand, within GFF264at 297.150 kb on + strand, within GFF264at 297.150 kb on + strand, within GFF264at 297.285 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.465 kb on + strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.466 kb on - strand, within GFF264at 297.540 kb on + strandat 297.540 kb on + strandat 297.540 kb on + strandat 297.541 kb on - strandat 297.741 kb on + strandat 297.741 kb on + strandat 297.741 kb on + strandat 297.741 kb on + strandat 297.741 kb on + strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.742 kb on - strandat 297.758 kb on + strandat 297.759 kb on - strandat 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.307 kb on - strand, within GFF265at 298.307 kb on - strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.628 kb on + strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 299.061 kb on - strandat 299.102 kb on + strandat 299.102 kb on + strandat 299.105 kb on + strandat 299.105 kb on + strandat 299.105 kb on + strandat 299.106 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.246 kb on + strandat 299.246 kb on + strandat 299.247 kb on - strandat 299.247 kb on - strandat 299.247 kb on - strandat 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.382 kb on - strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.805 kb on - strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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297,123 + GFF264 0.65 -0.8
297,150 + GFF264 0.67 -0.6
297,150 + GFF264 0.67 +0.9
297,285 + GFF264 0.75 +0.1
297,465 + GFF264 0.87 -1.3
297,465 + GFF264 0.87 +0.3
297,465 + GFF264 0.87 +0.6
297,465 + GFF264 0.87 -0.1
297,465 + GFF264 0.87 +1.3
297,465 + GFF264 0.87 -0.7
297,465 + GFF264 0.87 +0.3
297,465 + GFF264 0.87 +1.3
297,466 - GFF264 0.87 -0.1
297,466 - GFF264 0.87 +0.3
297,466 - GFF264 0.87 +1.3
297,466 - GFF264 0.87 +0.2
297,466 - GFF264 0.87 +0.9
297,466 - GFF264 0.87 -0.5
297,540 + -0.2
297,540 + -0.1
297,540 + -0.3
297,541 - +0.3
297,741 + -1.5
297,741 + -1.9
297,741 + +0.2
297,741 + -1.9
297,741 + -0.4
297,742 - -0.3
297,742 - -0.8
297,742 - +0.9
297,742 - -1.1
297,742 - -0.0
297,742 - -1.7
297,742 - -0.3
297,758 + +1.0
297,759 - -0.5
298,306 + GFF265 0.45 +0.7
298,306 + GFF265 0.45 -1.0
298,306 + GFF265 0.45 -1.2
298,306 + GFF265 0.45 -1.0
298,306 + GFF265 0.45 +0.3
298,306 + GFF265 0.45 +0.9
298,306 + GFF265 0.45 +0.7
298,306 + GFF265 0.45 +0.0
298,306 + GFF265 0.45 -0.7
298,306 + GFF265 0.45 -0.0
298,307 - GFF265 0.45 +0.6
298,307 - GFF265 0.45 -0.2
298,357 + GFF265 0.49 +0.8
298,357 + GFF265 0.49 -1.7
298,357 + GFF265 0.49 -1.0
298,357 + GFF265 0.49 -0.0
298,357 + GFF265 0.49 -0.1
298,357 + GFF265 0.49 -0.7
298,358 - GFF265 0.50 -1.4
298,358 - GFF265 0.50 +1.1
298,358 - GFF265 0.50 -0.2
298,358 - GFF265 0.50 +0.6
298,358 - GFF265 0.50 -0.1
298,358 - GFF265 0.50 -0.2
298,627 + GFF265 0.73 -0.9
298,627 + GFF265 0.73 +1.4
298,627 + GFF265 0.73 -0.7
298,627 + GFF265 0.73 +0.3
298,627 + GFF265 0.73 -1.5
298,627 + GFF265 0.73 +1.0
298,627 + GFF265 0.73 -0.1
298,627 + GFF265 0.73 +0.3
298,627 + GFF265 0.73 +0.0
298,627 + GFF265 0.73 +0.5
298,628 + GFF265 0.73 +0.4
298,628 - GFF265 0.73 -0.2
298,628 - GFF265 0.73 -0.2
298,628 - GFF265 0.73 +1.7
298,628 - GFF265 0.73 -1.3
298,628 - GFF265 0.73 -0.7
298,628 - GFF265 0.73 -0.1
298,651 + GFF265 0.75 -0.5
298,651 + GFF265 0.75 -0.2
298,651 + GFF265 0.75 +0.0
298,651 + GFF265 0.75 -1.0
298,652 - GFF265 0.75 +0.1
298,652 - GFF265 0.75 -0.5
298,652 - GFF265 0.75 -0.2
298,652 - GFF265 0.75 +0.9
299,061 - -1.3
299,102 + +0.6
299,102 + +0.5
299,105 + -0.1
299,105 + +0.7
299,105 + +0.4
299,106 - +1.3
299,187 - +0.6
299,187 - +0.5
299,187 - +0.3
299,187 - +1.3
299,187 - -0.3
299,187 - +0.9
299,187 - -1.1
299,187 - -0.0
299,187 - -0.2
299,246 + +0.3
299,246 + -0.3
299,247 - -1.6
299,247 - +0.6
299,247 - -0.1
299,369 + GFF266 0.14 -1.8
299,369 + GFF266 0.14 +0.3
299,369 + GFF266 0.14 -0.6
299,369 + GFF266 0.14 -0.1
299,369 + GFF266 0.14 -0.1
299,369 + GFF266 0.14 -1.1
299,369 + GFF266 0.14 +1.3
299,369 + GFF266 0.14 -0.4
299,369 + GFF266 0.14 +1.3
299,370 - GFF266 0.14 -0.1
299,370 - GFF266 0.14 -0.5
299,370 - GFF266 0.14 +0.3
299,370 - GFF266 0.14 -0.5
299,370 - GFF266 0.14 +0.1
299,370 - GFF266 0.14 +2.3
299,370 - GFF266 0.14 -0.0
299,370 - GFF266 0.14 -0.2
299,370 - GFF266 0.14 +0.9
299,381 + GFF266 0.14 -0.4
299,381 + GFF266 0.14 -0.3
299,381 + GFF266 0.14 -0.1
299,382 - GFF266 0.14 -0.4
299,585 + GFF266 0.21 -1.1
299,585 + GFF266 0.21 -0.3
299,585 + GFF266 0.21 +0.3
299,586 - GFF266 0.21 -0.3
299,586 - GFF266 0.21 +0.2
299,586 - GFF266 0.21 -0.3
299,753 + GFF266 0.26 +1.8
299,753 + GFF266 0.26 -0.6
299,753 + GFF266 0.26 -0.7
299,753 + GFF266 0.26 +0.1
299,753 + GFF266 0.26 +0.3
299,754 - GFF266 0.26 -0.6
299,754 - GFF266 0.26 +0.4
299,754 - GFF266 0.26 +0.2
299,754 - GFF266 0.26 -0.3
299,754 - GFF266 0.26 -0.1
299,754 - GFF266 0.26 +0.5
299,805 - GFF266 0.28 +2.3
299,909 + GFF266 0.31 -1.7
299,909 + GFF266 0.31 -0.7
299,909 + GFF266 0.31 +1.0
299,910 - GFF266 0.31 -0.2
299,910 - GFF266 0.31 -0.2
299,910 - GFF266 0.31 -0.5
299,910 - GFF266 0.31 -0.3
299,910 - GFF266 0.31 -1.1
299,910 - GFF266 0.31 +0.8
299,910 - GFF266 0.31 -0.6
299,910 - GFF266 0.31 +2.3

Or see this region's nucleotide sequence