Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2605 and GFF2606 are separated by 18 nucleotides GFF2606 and GFF2607 are separated by 19 nucleotides GFF2607 and GFF2608 overlap by 4 nucleotides
GFF2605 - Tricarboxylate transport sensor protein TctE, at 10,033 to 11,448
GFF2605
GFF2606 - Tripartite tricarboxylate transporter TctC family, at 11,467 to 12,483
GFF2606
GFF2607 - hypothetical protein, at 12,503 to 12,904
GFF2607
GFF2608 - Transcriptional regulator FrcR for fructose utilization, ROK family, at 12,901 to 14,124
GFF2608
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 10.661 kb on + strand, within GFF2605 at 10.661 kb on + strand, within GFF2605 at 10.661 kb on + strand, within GFF2605 at 10.856 kb on - strand, within GFF2605 at 11.164 kb on + strand, within GFF2605 at 11.164 kb on + strand, within GFF2605 at 11.165 kb on - strand, within GFF2605 at 11.689 kb on + strand, within GFF2606 at 11.689 kb on + strand, within GFF2606 at 11.689 kb on + strand, within GFF2606 at 11.690 kb on - strand, within GFF2606 at 11.690 kb on - strand, within GFF2606 at 12.268 kb on + strand, within GFF2606 at 12.268 kb on + strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.412 kb on + strand at 12.412 kb on + strand at 12.412 kb on + strand at 12.413 kb on - strand at 12.527 kb on + strand at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 13.233 kb on - strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.437 kb on - strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 10,661 + GFF2605 0.44 +0.7 10,661 + GFF2605 0.44 +0.2 10,661 + GFF2605 0.44 +0.3 10,856 - GFF2605 0.58 -1.1 11,164 + GFF2605 0.80 -2.2 11,164 + GFF2605 0.80 +0.5 11,165 - GFF2605 0.80 +0.0 11,689 + GFF2606 0.22 -0.0 11,689 + GFF2606 0.22 -1.3 11,689 + GFF2606 0.22 -0.4 11,690 - GFF2606 0.22 +0.7 11,690 - GFF2606 0.22 +0.1 12,268 + GFF2606 0.79 -1.8 12,268 + GFF2606 0.79 +0.1 12,269 - GFF2606 0.79 -0.8 12,269 - GFF2606 0.79 -0.4 12,346 + GFF2606 0.86 -0.2 12,346 + GFF2606 0.86 -0.2 12,346 + GFF2606 0.86 -0.2 12,376 + GFF2606 0.89 -0.4 12,376 + GFF2606 0.89 -1.1 12,377 - GFF2606 0.89 -0.5 12,377 - GFF2606 0.89 +0.3 12,412 + -1.6 12,412 + -0.9 12,412 + -0.7 12,413 - +0.1 12,527 + -0.4 12,803 + GFF2607 0.75 -0.4 12,803 + GFF2607 0.75 +0.5 12,803 + GFF2607 0.75 -0.2 12,803 + GFF2607 0.75 -0.1 12,803 + GFF2607 0.75 +0.2 12,803 + GFF2607 0.75 +0.5 12,803 + GFF2607 0.75 -0.4 12,804 - GFF2607 0.75 -0.1 12,804 - GFF2607 0.75 -0.1 12,804 - GFF2607 0.75 +0.3 12,804 - GFF2607 0.75 +0.8 12,804 - GFF2607 0.75 -1.3 12,804 - GFF2607 0.75 +0.5 13,233 - GFF2608 0.27 -1.8 13,428 + GFF2608 0.43 -0.2 13,428 + GFF2608 0.43 +1.3 13,437 - GFF2608 0.44 +0.3 13,442 + GFF2608 0.44 +0.5 13,442 + GFF2608 0.44 +0.2 13,442 + GFF2608 0.44 +1.1 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 +0.8 13,442 + GFF2608 0.44 +0.8 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.8 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.2 13,443 - GFF2608 0.44 -0.1 13,443 - GFF2608 0.44 -0.1 13,443 - GFF2608 0.44 +0.2 13,443 - GFF2608 0.44 -0.7 13,443 - GFF2608 0.44 +1.2 13,443 - GFF2608 0.44 -0.6 13,443 - GFF2608 0.44 -0.0
Or see this region's nucleotide sequence