Strain Fitness in Variovorax sp. SCN45 around GFF260

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF259 and GFF260 are separated by 29 nucleotidesGFF260 and GFF261 are separated by 191 nucleotidesGFF261 and GFF262 are separated by 71 nucleotides GFF259 - Bis-ABC ATPase YheS, at 291,309 to 293,309 GFF259 GFF260 - FIG00931356: hypothetical protein, at 293,339 to 293,842 GFF260 GFF261 - no description, at 294,034 to 294,267 GFF261 GFF262 - Phage repressor protein cI, at 294,339 to 295,055 GFF262 Position (kb) 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.494 kb on + strand, within GFF259at 292.494 kb on + strand, within GFF259at 292.494 kb on + strand, within GFF259at 292.495 kb on - strand, within GFF259at 292.573 kb on + strand, within GFF259at 292.926 kb on + strand, within GFF259at 292.926 kb on + strand, within GFF259at 292.927 kb on - strand, within GFF259at 292.927 kb on - strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.936 kb on - strand, within GFF259at 292.936 kb on - strand, within GFF259at 292.936 kb on - strand, within GFF259at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.811 kb on + strandat 293.811 kb on + strandat 293.812 kb on - strandat 294.062 kb on + strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.247 kb on + strandat 294.247 kb on + strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.292 kb on - strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.297 kb on - strandat 294.297 kb on - strandat 294.297 kb on - strandat 294.312 kb on + strandat 294.312 kb on + strandat 294.326 kb on + strandat 294.327 kb on - strandat 294.327 kb on - strandat 294.327 kb on - strandat 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.832 kb on - strand, within GFF262at 294.832 kb on - strand, within GFF262

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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292,494 + GFF259 0.59 -2.4
292,494 + GFF259 0.59 -0.3
292,494 + GFF259 0.59 +0.7
292,495 - GFF259 0.59 -0.6
292,573 + GFF259 0.63 -2.1
292,926 + GFF259 0.81 +0.0
292,926 + GFF259 0.81 +0.1
292,927 - GFF259 0.81 +0.2
292,927 - GFF259 0.81 -1.2
292,935 + GFF259 0.81 -0.0
292,935 + GFF259 0.81 -0.6
292,935 + GFF259 0.81 -0.5
292,935 + GFF259 0.81 -0.5
292,936 - GFF259 0.81 -0.3
292,936 - GFF259 0.81 -1.6
292,936 - GFF259 0.81 -0.1
293,699 + GFF260 0.71 -0.3
293,699 + GFF260 0.71 -0.4
293,699 + GFF260 0.71 +1.0
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 -2.2
293,699 + GFF260 0.71 +0.6
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 -0.3
293,699 + GFF260 0.71 -0.0
293,699 + GFF260 0.71 -1.4
293,699 + GFF260 0.71 -0.5
293,699 + GFF260 0.71 +0.7
293,699 + GFF260 0.71 -0.8
293,699 + GFF260 0.71 -0.9
293,699 + GFF260 0.71 +0.9
293,699 + GFF260 0.71 +1.0
293,699 + GFF260 0.71 +0.7
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -0.6
293,699 + GFF260 0.71 -0.9
293,699 + GFF260 0.71 -0.4
293,699 + GFF260 0.71 +1.0
293,699 + GFF260 0.71 -0.5
293,700 - GFF260 0.72 +0.1
293,700 - GFF260 0.72 +1.3
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 -0.1
293,700 - GFF260 0.72 +0.2
293,700 - GFF260 0.72 -0.3
293,700 - GFF260 0.72 -1.0
293,700 - GFF260 0.72 -1.0
293,700 - GFF260 0.72 -0.1
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 +0.5
293,700 - GFF260 0.72 +0.9
293,700 - GFF260 0.72 -0.7
293,811 + +0.9
293,811 + +0.3
293,812 - +0.9
294,062 + GFF261 0.12 +0.4
294,063 - GFF261 0.12 -1.0
294,063 - GFF261 0.12 -1.9
294,063 - GFF261 0.12 +0.5
294,063 - GFF261 0.12 -0.4
294,063 - GFF261 0.12 -0.3
294,063 - GFF261 0.12 +0.1
294,063 - GFF261 0.12 -0.6
294,063 - GFF261 0.12 +0.2
294,063 - GFF261 0.12 -0.7
294,107 + GFF261 0.31 -0.1
294,107 + GFF261 0.31 +0.6
294,107 + GFF261 0.31 -0.7
294,107 + GFF261 0.31 -0.5
294,107 + GFF261 0.31 -0.0
294,108 - GFF261 0.32 +0.5
294,108 - GFF261 0.32 -1.5
294,108 - GFF261 0.32 -1.1
294,108 - GFF261 0.32 -0.1
294,108 - GFF261 0.32 -0.7
294,108 - GFF261 0.32 +1.3
294,108 - GFF261 0.32 -2.5
294,108 - GFF261 0.32 -0.0
294,128 + GFF261 0.40 -0.1
294,128 + GFF261 0.40 +0.7
294,129 - GFF261 0.41 +0.3
294,129 - GFF261 0.41 +0.1
294,129 - GFF261 0.41 +0.2
294,129 - GFF261 0.41 +0.9
294,129 - GFF261 0.41 -0.5
294,129 - GFF261 0.41 -1.5
294,129 - GFF261 0.41 -1.8
294,247 + -0.5
294,247 + -1.5
294,248 - -0.3
294,248 - -0.6
294,248 - -2.3
294,292 - -0.5
294,296 + -0.7
294,296 + -0.5
294,296 + -1.3
294,296 + -0.5
294,297 - +0.2
294,297 - -0.3
294,297 - +0.1
294,312 + +0.9
294,312 + +0.5
294,326 + -0.1
294,327 - +0.1
294,327 - -1.5
294,327 - -0.6
294,639 + GFF262 0.42 -2.8
294,639 + GFF262 0.42 +1.4
294,639 + GFF262 0.42 -1.5
294,639 + GFF262 0.42 -0.1
294,639 + GFF262 0.42 +0.4
294,639 + GFF262 0.42 -0.4
294,639 + GFF262 0.42 +0.2
294,639 + GFF262 0.42 -0.3
294,639 + GFF262 0.42 -2.2
294,640 - GFF262 0.42 -0.7
294,640 - GFF262 0.42 -0.5
294,640 - GFF262 0.42 -0.1
294,640 - GFF262 0.42 -0.2
294,640 - GFF262 0.42 -1.5
294,640 - GFF262 0.42 -0.1
294,640 - GFF262 0.42 -0.9
294,640 - GFF262 0.42 +0.4
294,640 - GFF262 0.42 +0.5
294,640 - GFF262 0.42 +1.3
294,640 - GFF262 0.42 -0.1
294,640 - GFF262 0.42 +0.3
294,640 - GFF262 0.42 -0.7
294,640 - GFF262 0.42 -0.1
294,640 - GFF262 0.42 -1.0
294,640 - GFF262 0.42 +0.1
294,640 - GFF262 0.42 -0.7
294,774 + GFF262 0.61 -0.3
294,774 + GFF262 0.61 -0.2
294,774 + GFF262 0.61 +0.6
294,774 + GFF262 0.61 +0.2
294,774 + GFF262 0.61 -0.4
294,774 + GFF262 0.61 -1.0
294,774 + GFF262 0.61 -0.4
294,774 + GFF262 0.61 +0.9
294,774 + GFF262 0.61 -0.3
294,774 + GFF262 0.61 +0.2
294,774 + GFF262 0.61 -0.5
294,774 + GFF262 0.61 -0.1
294,774 + GFF262 0.61 +0.3
294,774 + GFF262 0.61 +0.6
294,775 - GFF262 0.61 +0.3
294,775 - GFF262 0.61 -0.8
294,775 - GFF262 0.61 +1.8
294,775 - GFF262 0.61 -1.1
294,775 - GFF262 0.61 -1.1
294,775 - GFF262 0.61 +0.9
294,775 - GFF262 0.61 +0.7
294,775 - GFF262 0.61 -0.5
294,775 - GFF262 0.61 -1.7
294,775 - GFF262 0.61 -0.7
294,775 - GFF262 0.61 -0.3
294,775 - GFF262 0.61 -1.2
294,775 - GFF262 0.61 -0.8
294,832 - GFF262 0.69 +0.7
294,832 - GFF262 0.69 +0.7

Or see this region's nucleotide sequence