Strain Fitness in Variovorax sp. SCN45 around GFF2547

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2546 and GFF2547 are separated by 105 nucleotidesGFF2547 and GFF2548 are separated by 9 nucleotidesGFF2548 and GFF2549 are separated by 37 nucleotides GFF2546 - sodium-solute symporter, putative, at 609,354 to 610,805 GFF2546 GFF2547 - Type I antifreeze protein, at 610,911 to 611,255 GFF2547 GFF2548 - Uncharacterized membrane anchored protein Mext_4159, at 611,265 to 611,897 GFF2548 GFF2549 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 611,935 to 613,740 GFF2549 Position (kb) 610 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.536 kb on + strand, within GFF2546at 610.536 kb on + strand, within GFF2546at 610.537 kb on - strand, within GFF2546at 610.537 kb on - strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.855 kb on - strandat 610.855 kb on - strandat 610.856 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.926 kb on + strandat 610.926 kb on + strandat 610.926 kb on + strandat 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.406 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.727 kb on + strand, within GFF2548at 611.727 kb on + strand, within GFF2548at 611.760 kb on + strand, within GFF2548at 611.760 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.826 kb on + strand, within GFF2548at 611.830 kb on + strand, within GFF2548

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 +0.1
610,161 + GFF2546 0.56 -1.9
610,161 + GFF2546 0.56 -0.4
610,161 + GFF2546 0.56 +0.2
610,161 + GFF2546 0.56 -0.6
610,161 + GFF2546 0.56 -0.4
610,161 + GFF2546 0.56 +0.4
610,161 + GFF2546 0.56 +0.2
610,161 + GFF2546 0.56 -0.3
610,161 + GFF2546 0.56 +0.7
610,161 + GFF2546 0.56 +0.2
610,161 + GFF2546 0.56 -2.2
610,161 + GFF2546 0.56 +1.7
610,161 + GFF2546 0.56 -0.4
610,161 + GFF2546 0.56 -0.8
610,161 + GFF2546 0.56 -0.6
610,161 + GFF2546 0.56 -0.0
610,161 + GFF2546 0.56 +0.1
610,161 + GFF2546 0.56 -1.3
610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 -0.9
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 +1.7
610,162 - GFF2546 0.56 -1.0
610,162 - GFF2546 0.56 -0.1
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 -0.3
610,162 - GFF2546 0.56 -0.0
610,162 - GFF2546 0.56 +0.8
610,162 - GFF2546 0.56 -1.1
610,162 - GFF2546 0.56 -0.2
610,162 - GFF2546 0.56 -1.0
610,162 - GFF2546 0.56 -1.2
610,162 - GFF2546 0.56 -0.3
610,162 - GFF2546 0.56 -0.0
610,162 - GFF2546 0.56 +0.2
610,162 - GFF2546 0.56 +1.4
610,162 - GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 -0.9
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 +1.7
610,162 - GFF2546 0.56 +1.1
610,485 + GFF2546 0.78 +0.2
610,485 + GFF2546 0.78 -0.1
610,485 + GFF2546 0.78 +2.4
610,485 + GFF2546 0.78 -0.6
610,485 + GFF2546 0.78 -0.8
610,485 + GFF2546 0.78 +0.5
610,486 - GFF2546 0.78 -0.6
610,486 - GFF2546 0.78 +0.7
610,486 - GFF2546 0.78 +0.0
610,486 - GFF2546 0.78 +0.4
610,486 - GFF2546 0.78 +1.7
610,486 - GFF2546 0.78 -0.5
610,515 + GFF2546 0.80 +0.5
610,515 + GFF2546 0.80 -0.3
610,515 + GFF2546 0.80 -0.9
610,515 + GFF2546 0.80 -0.6
610,515 + GFF2546 0.80 -0.3
610,515 + GFF2546 0.80 -0.3
610,515 + GFF2546 0.80 -3.2
610,515 + GFF2546 0.80 +0.1
610,515 + GFF2546 0.80 +0.7
610,515 + GFF2546 0.80 -0.0
610,515 + GFF2546 0.80 +0.2
610,515 + GFF2546 0.80 -1.4
610,516 - GFF2546 0.80 +0.1
610,516 - GFF2546 0.80 -0.4
610,516 - GFF2546 0.80 +1.6
610,516 - GFF2546 0.80 -0.2
610,516 - GFF2546 0.80 +0.0
610,536 + GFF2546 0.81 -0.1
610,536 + GFF2546 0.81 -0.4
610,537 - GFF2546 0.81 +0.6
610,537 - GFF2546 0.81 -0.4
610,584 + GFF2546 0.85 -0.1
610,584 + GFF2546 0.85 -1.0
610,584 + GFF2546 0.85 +0.3
610,585 - GFF2546 0.85 -0.5
610,585 - GFF2546 0.85 -0.6
610,585 - GFF2546 0.85 +0.4
610,585 - GFF2546 0.85 -0.6
610,855 - +0.1
610,855 - +0.5
610,856 + +0.7
610,920 + -0.2
610,920 + +0.7
610,920 + +0.7
610,920 + -0.1
610,926 + -0.3
610,926 + +0.9
610,926 + -1.4
611,070 + GFF2547 0.46 +0.1
611,070 + GFF2547 0.46 +0.1
611,070 + GFF2547 0.46 -0.5
611,070 + GFF2547 0.46 -1.1
611,406 + GFF2548 0.22 +0.0
611,553 + GFF2548 0.45 -1.8
611,553 + GFF2548 0.45 -0.8
611,553 + GFF2548 0.45 -0.3
611,553 + GFF2548 0.45 +0.0
611,553 + GFF2548 0.45 +0.5
611,553 + GFF2548 0.45 -1.3
611,727 + GFF2548 0.73 +0.1
611,727 + GFF2548 0.73 -0.3
611,760 + GFF2548 0.78 -0.9
611,760 + GFF2548 0.78 +0.9
611,826 + GFF2548 0.89 +0.6
611,826 + GFF2548 0.89 +0.3
611,826 + GFF2548 0.89 +0.5
611,826 + GFF2548 0.89 -0.3
611,826 + GFF2548 0.89 +0.1
611,826 + GFF2548 0.89 +0.5
611,826 + GFF2548 0.89 +1.1
611,826 + GFF2548 0.89 -2.2
611,826 + GFF2548 0.89 +0.0
611,826 + GFF2548 0.89 -0.9
611,826 + GFF2548 0.89 +0.3
611,826 + GFF2548 0.89 +0.9
611,826 + GFF2548 0.89 -0.8
611,826 + GFF2548 0.89 +0.7
611,826 + GFF2548 0.89 +0.6
611,826 + GFF2548 0.89 -0.3
611,826 + GFF2548 0.89 -1.0
611,830 + GFF2548 0.89 -2.5

Or see this region's nucleotide sequence