Strain Fitness in Variovorax sp. SCN45 around GFF2532

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2530 and GFF2531 are separated by 238 nucleotidesGFF2531 and GFF2532 are separated by 22 nucleotidesGFF2532 and GFF2533 are separated by 52 nucleotidesGFF2533 and GFF2534 are separated by 127 nucleotides GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511 GFF2530 GFF2531 - Transcriptional regulator, AsnC family, at 590,750 to 591,226 GFF2531 GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714 GFF2532 GFF2533 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 593,767 to 594,510 GFF2533 GFF2534 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 594,638 to 595,645 GFF2534 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2at 590.288 kb on + strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.370 kb on - strand, within GFF2530at 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.659 kb on + strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.667 kb on - strandat 590.667 kb on - strandat 590.679 kb on + strandat 590.680 kb on - strandat 590.680 kb on - strandat 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.433 kb on + strandat 591.433 kb on + strandat 591.433 kb on + strandat 591.434 kb on - strandat 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.931 kb on + strand, within GFF2532at 591.932 kb on - strand, within GFF2532at 591.932 kb on - strand, within GFF2532at 591.981 kb on - strand, within GFF2532at 591.981 kb on - strand, within GFF2532at 591.991 kb on + strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 591.992 kb on - strand, within GFF2532at 592.065 kb on + strand, within GFF2532at 592.066 kb on - strand, within GFF2532at 592.156 kb on - strand, within GFF2532at 592.183 kb on + strand, within GFF2532at 592.183 kb on + strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.184 kb on - strand, within GFF2532at 592.331 kb on - strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.342 kb on + strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.343 kb on - strand, within GFF2532at 592.408 kb on + strand, within GFF2532at 592.408 kb on + strand, within GFF2532at 592.408 kb on + strand, within GFF2532at 592.408 kb on + strand, within GFF2532at 592.409 kb on - strand, within GFF2532at 592.409 kb on - strand, within GFF2532at 592.537 kb on + strand, within GFF2532at 592.538 kb on - strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.581 kb on + strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.582 kb on - strand, within GFF2532at 592.630 kb on - strand, within GFF2532at 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.752 kb on + strandat 593.753 kb on - strandat 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 594.240 kb on - strand, within GFF2533at 594.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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590,288 + GFF2530 0.76 -0.3
590,289 - GFF2530 0.76 +1.3
590,289 - GFF2530 0.76 +1.1
590,289 - GFF2530 0.76 -0.5
590,289 - GFF2530 0.76 -1.6
590,289 - GFF2530 0.76 +0.6
590,289 - GFF2530 0.76 +0.4
590,289 - GFF2530 0.76 +0.5
590,289 - GFF2530 0.76 +0.3
590,289 - GFF2530 0.76 -0.3
590,339 + GFF2530 0.82 +0.0
590,339 + GFF2530 0.82 +0.1
590,339 + GFF2530 0.82 -1.0
590,339 + GFF2530 0.82 -0.3
590,339 + GFF2530 0.82 +0.8
590,339 + GFF2530 0.82 -0.6
590,339 + GFF2530 0.82 -0.3
590,339 + GFF2530 0.82 -0.3
590,340 - GFF2530 0.82 +1.3
590,340 - GFF2530 0.82 +0.3
590,340 - GFF2530 0.82 -0.4
590,340 - GFF2530 0.82 -1.3
590,340 - GFF2530 0.82 -0.3
590,370 - GFF2530 0.85 -0.1
590,549 + -0.3
590,549 + +0.2
590,549 + -0.7
590,549 + -0.4
590,549 + +0.4
590,549 + +0.3
590,549 + +0.6
590,549 + -0.5
590,549 + -0.8
590,549 + -0.6
590,549 + -0.6
590,549 + -0.6
590,550 - -0.1
590,550 - -0.1
590,550 - +0.5
590,550 - +0.9
590,550 - +0.2
590,550 - +0.1
590,550 - -0.5
590,550 - -0.4
590,550 - -0.3
590,659 + +0.3
590,660 - +1.2
590,660 - -0.8
590,660 - -0.5
590,660 - -0.2
590,660 - -0.8
590,660 - -0.6
590,667 - +0.4
590,667 - +0.3
590,679 + -0.2
590,680 - -0.0
590,680 - +0.5
590,918 + GFF2531 0.35 +0.9
590,918 + GFF2531 0.35 -0.1
590,918 + GFF2531 0.35 +1.2
591,056 + GFF2531 0.64 -0.6
591,056 + GFF2531 0.64 -0.4
591,056 + GFF2531 0.64 -0.0
591,056 + GFF2531 0.64 -0.2
591,056 + GFF2531 0.64 -0.4
591,056 + GFF2531 0.64 -0.6
591,057 - GFF2531 0.64 -0.4
591,057 - GFF2531 0.64 +0.9
591,057 - GFF2531 0.64 -0.4
591,057 - GFF2531 0.64 -0.5
591,057 - GFF2531 0.64 +0.5
591,057 - GFF2531 0.64 +2.4
591,080 + GFF2531 0.69 +0.1
591,080 + GFF2531 0.69 -1.5
591,080 + GFF2531 0.69 -0.3
591,080 + GFF2531 0.69 +0.1
591,080 + GFF2531 0.69 -1.0
591,080 + GFF2531 0.69 +0.2
591,080 + GFF2531 0.69 -0.9
591,080 + GFF2531 0.69 +0.5
591,081 - GFF2531 0.69 -0.2
591,081 - GFF2531 0.69 -0.0
591,081 - GFF2531 0.69 -0.4
591,081 - GFF2531 0.69 +0.8
591,081 - GFF2531 0.69 -1.0
591,433 + +0.7
591,433 + +0.9
591,433 + -0.3
591,434 - -0.5
591,931 + GFF2532 0.28 +0.1
591,931 + GFF2532 0.28 -0.4
591,931 + GFF2532 0.28 -0.1
591,931 + GFF2532 0.28 -0.6
591,931 + GFF2532 0.28 +0.1
591,932 - GFF2532 0.28 -0.6
591,932 - GFF2532 0.28 +0.3
591,981 - GFF2532 0.30 -1.5
591,981 - GFF2532 0.30 -0.2
591,991 + GFF2532 0.30 -0.2
591,992 - GFF2532 0.30 +0.2
591,992 - GFF2532 0.30 -0.6
591,992 - GFF2532 0.30 +0.6
592,065 + GFF2532 0.33 -0.0
592,066 - GFF2532 0.33 -1.1
592,156 - GFF2532 0.37 +0.9
592,183 + GFF2532 0.38 +0.3
592,183 + GFF2532 0.38 +0.3
592,184 - GFF2532 0.38 -0.1
592,184 - GFF2532 0.38 +0.3
592,184 - GFF2532 0.38 -0.1
592,184 - GFF2532 0.38 +0.7
592,331 - GFF2532 0.44 -0.1
592,342 + GFF2532 0.44 +1.7
592,342 + GFF2532 0.44 -1.5
592,342 + GFF2532 0.44 -0.6
592,342 + GFF2532 0.44 -0.1
592,342 + GFF2532 0.44 -0.0
592,342 + GFF2532 0.44 +0.1
592,342 + GFF2532 0.44 +0.0
592,342 + GFF2532 0.44 -0.4
592,342 + GFF2532 0.44 +0.0
592,342 + GFF2532 0.44 -0.1
592,342 + GFF2532 0.44 -0.3
592,342 + GFF2532 0.44 +0.5
592,342 + GFF2532 0.44 -2.1
592,342 + GFF2532 0.44 -0.3
592,342 + GFF2532 0.44 +0.3
592,342 + GFF2532 0.44 +0.1
592,342 + GFF2532 0.44 -0.0
592,342 + GFF2532 0.44 +0.2
592,342 + GFF2532 0.44 -0.9
592,342 + GFF2532 0.44 +1.0
592,342 + GFF2532 0.44 +0.6
592,342 + GFF2532 0.44 +0.0
592,343 - GFF2532 0.44 -0.6
592,343 - GFF2532 0.44 -0.6
592,343 - GFF2532 0.44 -0.3
592,343 - GFF2532 0.44 -1.4
592,343 - GFF2532 0.44 -1.3
592,343 - GFF2532 0.44 -0.1
592,343 - GFF2532 0.44 -0.2
592,343 - GFF2532 0.44 -0.6
592,343 - GFF2532 0.44 +0.4
592,343 - GFF2532 0.44 +0.1
592,343 - GFF2532 0.44 -0.9
592,343 - GFF2532 0.44 +0.3
592,343 - GFF2532 0.44 +0.5
592,343 - GFF2532 0.44 +1.4
592,343 - GFF2532 0.44 -0.5
592,343 - GFF2532 0.44 -0.5
592,343 - GFF2532 0.44 -0.2
592,343 - GFF2532 0.44 -0.9
592,343 - GFF2532 0.44 -0.3
592,343 - GFF2532 0.44 -1.9
592,343 - GFF2532 0.44 -0.5
592,343 - GFF2532 0.44 -0.3
592,343 - GFF2532 0.44 -0.9
592,343 - GFF2532 0.44 +0.0
592,408 + GFF2532 0.47 -0.6
592,408 + GFF2532 0.47 +0.5
592,408 + GFF2532 0.47 -0.2
592,408 + GFF2532 0.47 +0.3
592,409 - GFF2532 0.47 +0.9
592,409 - GFF2532 0.47 -0.1
592,537 + GFF2532 0.52 -1.1
592,538 - GFF2532 0.52 +1.4
592,581 + GFF2532 0.54 -0.2
592,581 + GFF2532 0.54 +0.1
592,581 + GFF2532 0.54 +1.1
592,581 + GFF2532 0.54 -0.6
592,581 + GFF2532 0.54 -0.6
592,581 + GFF2532 0.54 +0.0
592,581 + GFF2532 0.54 -0.3
592,582 - GFF2532 0.54 +0.3
592,582 - GFF2532 0.54 -0.5
592,582 - GFF2532 0.54 -0.1
592,582 - GFF2532 0.54 +0.2
592,582 - GFF2532 0.54 +0.9
592,582 - GFF2532 0.54 +0.1
592,582 - GFF2532 0.54 +0.7
592,582 - GFF2532 0.54 -0.1
592,582 - GFF2532 0.54 -1.3
592,582 - GFF2532 0.54 -0.2
592,582 - GFF2532 0.54 -0.4
592,630 - GFF2532 0.56 +0.7
593,725 + +0.5
593,725 + +0.1
593,725 + -0.9
593,725 + -0.9
593,725 + +0.2
593,725 + +0.2
593,726 - -2.3
593,726 - +0.7
593,726 - +1.9
593,726 - -0.3
593,726 - +0.3
593,726 - -0.2
593,726 - +1.3
593,726 - -0.4
593,726 - -1.6
593,726 - +0.7
593,726 - +0.3
593,726 - +0.5
593,726 - -0.6
593,726 - +0.8
593,726 - +0.3
593,742 + -0.3
593,742 + -0.6
593,742 + -0.6
593,742 + -0.4
593,742 + +0.3
593,742 + +0.0
593,743 - +0.2
593,743 - +0.2
593,743 - -0.2
593,743 - +0.3
593,752 + +0.0
593,753 - +0.4
593,864 + GFF2533 0.13 -1.1
593,864 + GFF2533 0.13 +0.6
593,864 + GFF2533 0.13 -1.0
593,865 - GFF2533 0.13 +1.6
593,865 - GFF2533 0.13 -0.4
593,865 - GFF2533 0.13 -1.3
593,865 - GFF2533 0.13 +0.1
594,240 - GFF2533 0.64 -0.4
594,489 - -0.5

Or see this region's nucleotide sequence