Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2454 and GFF2455 overlap by 4 nucleotides GFF2455 and GFF2457 are separated by 325 nucleotides GFF2457 and GFF2456 overlap by 2 nucleotides
GFF2454 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 511,325 to 512,776
GFF2454
GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465
GFF2455
GFF2457 - no description, at 513,791 to 514,078
GFF2457
GFF2456 - no description, at 514,077 to 514,409
GFF2456
Position (kb) 512
513
514 Strain fitness (log2 ratio) -1
0
1 at 512.705 kb on + strand at 512.705 kb on + strand at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.941 kb on + strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 513.061 kb on + strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.578 kb on - strand at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.942 kb on - strand, within GFF2457
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 512,705 + +0.3 512,705 + -0.5 512,938 + GFF2455 0.24 +0.1 512,938 + GFF2455 0.24 +1.0 512,938 + GFF2455 0.24 -0.2 512,939 - GFF2455 0.24 +0.0 512,939 - GFF2455 0.24 +1.1 512,939 - GFF2455 0.24 +0.3 512,939 - GFF2455 0.24 -0.3 512,941 + GFF2455 0.24 +0.9 512,942 - GFF2455 0.24 -0.5 512,942 - GFF2455 0.24 +1.1 512,942 - GFF2455 0.24 -0.2 512,942 - GFF2455 0.24 +1.7 512,942 - GFF2455 0.24 -0.2 513,061 + GFF2455 0.42 +0.3 513,062 - GFF2455 0.42 +1.0 513,062 - GFF2455 0.42 -0.3 513,062 - GFF2455 0.42 +0.5 513,062 - GFF2455 0.42 -0.6 513,089 - GFF2455 0.46 -0.5 513,089 - GFF2455 0.46 +0.9 513,578 - -0.5 513,941 + GFF2457 0.52 -0.2 513,941 + GFF2457 0.52 +0.4 513,941 + GFF2457 0.52 +0.6 513,942 - GFF2457 0.52 +0.5
Or see this region's nucleotide sequence