Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2433 and GFF2434 are separated by 81 nucleotides GFF2434 and GFF2435 overlap by 4 nucleotides GFF2435 and GFF2436 overlap by 4 nucleotides GFF2436 and GFF2437 are separated by 48 nucleotides
GFF2433 - Putative OMR family iron-siderophore receptor precursor, at 482,760 to 485,210
GFF2433
GFF2434 - no description, at 485,292 to 485,588
GFF2434
GFF2435 - FIG138928: iron-regulated membrane protein, at 485,585 to 487,261
GFF2435
GFF2436 - no description, at 487,258 to 487,620
GFF2436
GFF2437 - hypothetical protein, at 487,669 to 488,322
GFF2437
Position (kb) 485
486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 484.599 kb on + strand, within GFF2433 at 484.599 kb on + strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.626 kb on + strand, within GFF2433 at 484.626 kb on + strand, within GFF2433 at 484.627 kb on - strand, within GFF2433 at 484.628 kb on - strand, within GFF2433 at 484.670 kb on + strand, within GFF2433 at 484.670 kb on + strand, within GFF2433 at 484.708 kb on + strand, within GFF2433 at 484.758 kb on + strand, within GFF2433 at 484.758 kb on + strand, within GFF2433 at 484.759 kb on - strand, within GFF2433 at 484.759 kb on - strand, within GFF2433 at 484.761 kb on + strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.929 kb on + strand, within GFF2433 at 484.930 kb on - strand, within GFF2433 at 484.995 kb on + strand at 484.995 kb on + strand at 484.995 kb on + strand at 484.996 kb on - strand at 484.996 kb on - strand at 484.998 kb on + strand at 484.998 kb on + strand at 485.004 kb on + strand at 485.005 kb on - strand at 485.134 kb on - strand at 485.134 kb on - strand at 485.134 kb on - strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.160 kb on + strand at 485.160 kb on + strand at 485.160 kb on + strand at 485.161 kb on - strand at 485.164 kb on - strand at 485.199 kb on + strand at 485.199 kb on + strand at 485.199 kb on + strand at 485.200 kb on - strand at 485.200 kb on - strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.638 kb on + strand at 485.638 kb on + strand at 485.638 kb on + strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.843 kb on + strand, within GFF2435 at 485.843 kb on + strand, within GFF2435 at 485.843 kb on + strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.924 kb on + strand, within GFF2435 at 485.924 kb on + strand, within GFF2435 at 485.925 kb on - strand, within GFF2435 at 485.948 kb on + strand, within GFF2435 at 485.948 kb on + strand, within GFF2435 at 486.062 kb on + strand, within GFF2435 at 486.062 kb on + strand, within GFF2435 at 486.269 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.522 kb on - strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 487.270 kb on + strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.300 kb on + strand, within GFF2436 at 487.300 kb on + strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.529 kb on - strand, within GFF2436 at 487.753 kb on + strand, within GFF2437 at 487.753 kb on + strand, within GFF2437 at 487.754 kb on - strand, within GFF2437 at 487.987 kb on + strand, within GFF2437 at 487.988 kb on - strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.201 kb on - strand, within GFF2437 at 488.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 484,599 + GFF2433 0.75 -0.1 484,599 + GFF2433 0.75 -0.2 484,600 - GFF2433 0.75 +1.2 484,600 - GFF2433 0.75 -0.1 484,600 - GFF2433 0.75 +0.1 484,626 + GFF2433 0.76 -1.6 484,626 + GFF2433 0.76 +2.4 484,627 - GFF2433 0.76 +0.5 484,628 - GFF2433 0.76 +0.0 484,670 + GFF2433 0.78 -1.1 484,670 + GFF2433 0.78 +0.7 484,708 + GFF2433 0.79 -0.7 484,758 + GFF2433 0.82 +1.7 484,758 + GFF2433 0.82 +0.2 484,759 - GFF2433 0.82 -0.6 484,759 - GFF2433 0.82 -0.8 484,761 + GFF2433 0.82 -0.3 484,762 - GFF2433 0.82 -1.8 484,762 - GFF2433 0.82 -0.4 484,762 - GFF2433 0.82 +0.6 484,762 - GFF2433 0.82 -0.4 484,929 + GFF2433 0.88 -0.0 484,930 - GFF2433 0.89 -0.2 484,995 + +1.0 484,995 + -0.5 484,995 + -3.0 484,996 - +0.9 484,996 - -0.6 484,998 + -0.1 484,998 + -0.6 485,004 + -1.1 485,005 - -0.2 485,134 - -0.6 485,134 - -0.9 485,134 - -0.4 485,136 + -0.5 485,136 + -0.3 485,136 + +0.6 485,160 + -0.1 485,160 + -0.1 485,160 + +0.9 485,161 - +0.4 485,164 - -1.1 485,199 + -1.5 485,199 + +0.3 485,199 + -1.1 485,200 - -0.4 485,200 - +0.2 485,249 + +0.1 485,249 + +0.3 485,249 + +1.0 485,249 + -1.5 485,250 - -0.2 485,250 - -0.4 485,250 - -0.9 485,250 - -0.1 485,638 + -0.2 485,638 + +1.0 485,638 + +0.5 485,639 - +0.2 485,639 - -0.3 485,639 - -1.2 485,639 - -0.3 485,639 - -1.1 485,639 - +0.1 485,843 + GFF2435 0.15 -0.2 485,843 + GFF2435 0.15 +0.1 485,843 + GFF2435 0.15 +0.2 485,844 - GFF2435 0.15 -0.4 485,844 - GFF2435 0.15 +2.9 485,844 - GFF2435 0.15 -0.8 485,844 - GFF2435 0.15 -1.8 485,844 - GFF2435 0.15 +2.4 485,924 + GFF2435 0.20 -0.8 485,924 + GFF2435 0.20 -2.2 485,925 - GFF2435 0.20 +0.3 485,948 + GFF2435 0.22 -0.5 485,948 + GFF2435 0.22 -0.7 486,062 + GFF2435 0.28 -1.3 486,062 + GFF2435 0.28 -1.1 486,269 + GFF2435 0.41 +0.0 486,521 + GFF2435 0.56 -0.7 486,521 + GFF2435 0.56 -0.4 486,522 - GFF2435 0.56 -1.3 486,719 + GFF2435 0.68 -0.5 486,719 + GFF2435 0.68 +0.2 486,720 - GFF2435 0.68 -0.8 486,720 - GFF2435 0.68 +0.1 487,270 + -0.4 487,271 - -0.6 487,271 - +1.0 487,271 - +0.1 487,271 - +0.1 487,271 - -0.6 487,271 - +0.4 487,300 + GFF2436 0.12 -0.0 487,300 + GFF2436 0.12 +1.1 487,459 - GFF2436 0.55 -1.4 487,459 - GFF2436 0.55 -1.8 487,529 - GFF2436 0.75 +0.7 487,753 + GFF2437 0.13 -1.8 487,753 + GFF2437 0.13 -1.5 487,754 - GFF2437 0.13 -0.4 487,987 + GFF2437 0.49 +0.4 487,988 - GFF2437 0.49 +0.6 488,200 + GFF2437 0.81 -0.4 488,200 + GFF2437 0.81 -1.3 488,200 + GFF2437 0.81 +0.4 488,201 - GFF2437 0.81 +1.7 488,257 + +0.5
Or see this region's nucleotide sequence