Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2417 and GFF2418 are separated by 26 nucleotides GFF2418 and GFF2419 are separated by 36 nucleotides
GFF2417 - putative amidase, at 467,984 to 469,414
GFF2417
GFF2418 - BUG/TctC family periplasmic protein, at 469,441 to 470,430
GFF2418
GFF2419 - putative amidase, at 470,467 to 471,843
GFF2419
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 468.613 kb on - strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.771 kb on + strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 469.652 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.995 kb on - strand, within GFF2418 at 470.012 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.150 kb on + strand, within GFF2418 at 470.309 kb on + strand, within GFF2418 at 470.510 kb on + strand at 470.618 kb on + strand, within GFF2419 at 470.624 kb on + strand, within GFF2419 at 470.624 kb on + strand, within GFF2419 at 470.625 kb on - strand, within GFF2419 at 470.625 kb on - strand, within GFF2419 at 470.926 kb on + strand, within GFF2419 at 470.927 kb on - strand, within GFF2419 at 470.927 kb on - strand, within GFF2419 at 471.228 kb on - strand, within GFF2419 at 471.253 kb on + strand, within GFF2419
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 468,613 - GFF2417 0.44 -0.1 468,663 + GFF2417 0.47 -1.1 468,663 + GFF2417 0.47 -0.1 468,663 + GFF2417 0.47 +0.2 468,664 - GFF2417 0.48 -0.3 468,664 - GFF2417 0.48 +0.3 468,664 - GFF2417 0.48 +0.7 468,664 - GFF2417 0.48 -0.0 468,664 - GFF2417 0.48 -0.5 468,664 - GFF2417 0.48 -0.3 468,771 + GFF2417 0.55 +0.1 468,772 - GFF2417 0.55 -1.6 468,772 - GFF2417 0.55 -0.9 468,772 - GFF2417 0.55 +0.2 468,772 - GFF2417 0.55 -1.0 468,772 - GFF2417 0.55 +1.7 469,652 + GFF2418 0.21 +0.1 469,781 + GFF2418 0.34 +0.0 469,781 + GFF2418 0.34 -0.2 469,782 - GFF2418 0.34 -0.1 469,782 - GFF2418 0.34 -0.1 469,782 - GFF2418 0.34 -0.8 469,994 + GFF2418 0.56 +2.3 469,994 + GFF2418 0.56 +0.7 469,994 + GFF2418 0.56 +1.2 469,995 - GFF2418 0.56 -0.1 470,012 + GFF2418 0.58 -0.1 470,108 + GFF2418 0.67 +0.1 470,108 + GFF2418 0.67 +3.5 470,150 + GFF2418 0.72 -0.1 470,309 + GFF2418 0.88 +1.4 470,510 + -0.2 470,618 + GFF2419 0.11 +0.2 470,624 + GFF2419 0.11 +0.2 470,624 + GFF2419 0.11 +0.4 470,625 - GFF2419 0.11 -0.3 470,625 - GFF2419 0.11 -2.4 470,926 + GFF2419 0.33 -0.1 470,927 - GFF2419 0.33 +1.0 470,927 - GFF2419 0.33 +0.8 471,228 - GFF2419 0.55 +1.7 471,253 + GFF2419 0.57 -0.5
Or see this region's nucleotide sequence