Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2393 and GFF2394 are separated by 34 nucleotides GFF2394 and GFF2395 are separated by 44 nucleotides GFF2395 and GFF2396 overlap by 13 nucleotides
GFF2393 - Biopolymer transport protein ExbD/TolR, at 442,814 to 443,242
GFF2393
GFF2394 - MotA/TolQ/ExbB proton channel family protein, at 443,277 to 444,146
GFF2394
GFF2395 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 444,191 to 445,384
GFF2395
GFF2396 - MlrC, at 445,372 to 447,765
GFF2396
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 443.377 kb on + strand, within GFF2394 at 443.377 kb on + strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.836 kb on + strand, within GFF2394 at 443.837 kb on - strand, within GFF2394 at 444.646 kb on - strand, within GFF2395 at 444.828 kb on + strand, within GFF2395 at 444.829 kb on - strand, within GFF2395 at 445.116 kb on + strand, within GFF2395 at 445.117 kb on - strand, within GFF2395 at 445.149 kb on + strand, within GFF2395 at 445.707 kb on - strand, within GFF2396 at 445.707 kb on - strand, within GFF2396 at 445.928 kb on + strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 446.084 kb on + strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.099 kb on + strand, within GFF2396 at 446.099 kb on + strand, within GFF2396 at 446.100 kb on - strand, within GFF2396 at 446.243 kb on + strand, within GFF2396 at 446.244 kb on - strand, within GFF2396 at 446.333 kb on + strand, within GFF2396
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 443,377 + GFF2394 0.11 -0.1 443,377 + GFF2394 0.11 +0.0 443,504 - GFF2394 0.26 +1.3 443,504 - GFF2394 0.26 +0.1 443,504 - GFF2394 0.26 -0.1 443,504 - GFF2394 0.26 -1.1 443,504 - GFF2394 0.26 -0.1 443,836 + GFF2394 0.64 -2.3 443,837 - GFF2394 0.64 +0.3 444,646 - GFF2395 0.38 -0.7 444,828 + GFF2395 0.53 -2.2 444,829 - GFF2395 0.53 +0.9 445,116 + GFF2395 0.77 +0.7 445,117 - GFF2395 0.78 +1.4 445,149 + GFF2395 0.80 -1.2 445,707 - GFF2396 0.14 -0.0 445,707 - GFF2396 0.14 -0.4 445,928 + GFF2396 0.23 -0.5 445,929 - GFF2396 0.23 -0.7 445,929 - GFF2396 0.23 -0.3 445,929 - GFF2396 0.23 -0.9 446,084 + GFF2396 0.30 -0.4 446,085 - GFF2396 0.30 -0.1 446,085 - GFF2396 0.30 +0.1 446,085 - GFF2396 0.30 -0.7 446,085 - GFF2396 0.30 -0.9 446,099 + GFF2396 0.30 +0.7 446,099 + GFF2396 0.30 -1.0 446,100 - GFF2396 0.30 -0.4 446,243 + GFF2396 0.36 -0.3 446,244 - GFF2396 0.36 -1.1 446,333 + GFF2396 0.40 +0.0
Or see this region's nucleotide sequence