Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2344 and GFF2345 are separated by 112 nucleotides GFF2345 and GFF2346 overlap by 15 nucleotides GFF2346 and GFF2347 are separated by 36 nucleotides GFF2347 and GFF2348 are separated by 78 nucleotides
GFF2344 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 395,554 to 396,504
GFF2344
GFF2345 - Uncharacterized ferredoxin-like protein YfhL, at 396,617 to 396,886
GFF2345
GFF2346 - no description, at 396,872 to 397,381
GFF2346
GFF2347 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 397,418 to 398,050
GFF2347
GFF2348 - LSU ribosomal protein L25p, at 398,129 to 398,809
GFF2348
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 396.263 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.490 kb on + strand at 396.491 kb on - strand at 396.521 kb on + strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.833 kb on + strand, within GFF2345 at 396.833 kb on + strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.858 kb on + strand, within GFF2345 at 396.859 kb on - strand, within GFF2345 at 396.859 kb on - strand, within GFF2345 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.302 kb on + strand, within GFF2346 at 397.302 kb on + strand, within GFF2346 at 397.303 kb on - strand, within GFF2346 at 397.303 kb on - strand, within GFF2346 at 397.311 kb on - strand, within GFF2346 at 397.419 kb on + strand at 397.419 kb on + strand at 397.420 kb on - strand at 398.060 kb on + strand at 398.061 kb on - strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.130 kb on + strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand at 398.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 396,263 + GFF2344 0.75 +0.1 396,263 + GFF2344 0.75 -1.5 396,490 + -0.3 396,491 - -0.7 396,521 + -0.7 396,522 - -0.6 396,522 - +0.4 396,522 - -0.3 396,522 - +0.7 396,522 - -1.6 396,522 - +0.1 396,833 + GFF2345 0.80 -2.0 396,833 + GFF2345 0.80 -1.2 396,834 - GFF2345 0.80 -0.0 396,834 - GFF2345 0.80 -1.7 396,834 - GFF2345 0.80 -0.1 396,858 + GFF2345 0.89 -0.1 396,859 - GFF2345 0.90 -0.4 396,859 - GFF2345 0.90 -1.3 397,086 + GFF2346 0.42 +0.7 397,086 + GFF2346 0.42 +0.2 397,086 + GFF2346 0.42 -0.0 397,086 + GFF2346 0.42 -0.6 397,086 + GFF2346 0.42 +1.0 397,086 + GFF2346 0.42 +1.1 397,086 + GFF2346 0.42 -0.2 397,086 + GFF2346 0.42 -0.3 397,086 + GFF2346 0.42 -0.4 397,086 + GFF2346 0.42 -0.1 397,086 + GFF2346 0.42 -0.8 397,086 + GFF2346 0.42 +0.3 397,086 + GFF2346 0.42 -0.3 397,086 + GFF2346 0.42 -0.2 397,086 + GFF2346 0.42 -0.5 397,086 + GFF2346 0.42 -0.1 397,086 + GFF2346 0.42 +0.8 397,086 + GFF2346 0.42 +0.1 397,086 + GFF2346 0.42 -0.4 397,087 - GFF2346 0.42 -0.3 397,087 - GFF2346 0.42 -0.4 397,087 - GFF2346 0.42 -0.6 397,087 - GFF2346 0.42 +0.6 397,087 - GFF2346 0.42 +0.8 397,087 - GFF2346 0.42 -0.1 397,087 - GFF2346 0.42 -0.0 397,237 + GFF2346 0.72 -0.5 397,237 + GFF2346 0.72 -0.8 397,237 + GFF2346 0.72 -0.5 397,238 - GFF2346 0.72 -2.0 397,238 - GFF2346 0.72 +0.7 397,238 - GFF2346 0.72 +0.5 397,238 - GFF2346 0.72 +0.1 397,239 + GFF2346 0.72 -1.4 397,239 + GFF2346 0.72 -0.1 397,239 + GFF2346 0.72 +0.9 397,239 + GFF2346 0.72 +0.1 397,239 + GFF2346 0.72 +0.8 397,239 + GFF2346 0.72 +0.7 397,239 + GFF2346 0.72 +0.0 397,239 + GFF2346 0.72 -0.3 397,240 - GFF2346 0.72 +3.3 397,240 - GFF2346 0.72 +0.8 397,240 - GFF2346 0.72 +0.2 397,240 - GFF2346 0.72 +0.9 397,240 - GFF2346 0.72 +0.1 397,240 - GFF2346 0.72 -0.7 397,302 + GFF2346 0.84 +1.1 397,302 + GFF2346 0.84 -0.3 397,303 - GFF2346 0.85 -0.7 397,303 - GFF2346 0.85 +0.3 397,311 - GFF2346 0.86 +0.3 397,419 + +0.7 397,419 + -1.8 397,420 - -0.1 398,060 + -1.1 398,061 - +0.3 398,130 + -0.2 398,130 + -0.9 398,130 + +0.1 398,130 + -0.2 398,130 + +0.3 398,130 + +0.3 398,130 + -0.1 398,130 + -0.3 398,130 + -0.3 398,130 + +0.1 398,130 + -0.5 398,130 + -0.3 398,130 + -0.1 398,131 - -0.5 398,131 - +0.6 398,131 - +1.1 398,131 - -0.8 398,131 - -0.3 398,131 - +1.1 398,131 - -0.4 398,131 - -0.0 398,131 - -0.5 398,131 - -1.2
Or see this region's nucleotide sequence