Strain Fitness in Variovorax sp. SCN45 around GFF2339

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2338 and GFF2339 overlap by 10 nucleotidesGFF2339 and GFF2340 are separated by 213 nucleotides GFF2338 - Amidase family protein Atu4441, at 388,148 to 389,554 GFF2338 GFF2339 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 389,545 to 391,032 GFF2339 GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739 GFF2340 Position (kb) 389 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.555 kb on - strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 389.176 kb on - strand, within GFF2338at 389.352 kb on + strand, within GFF2338at 389.352 kb on + strand, within GFF2338at 389.353 kb on - strand, within GFF2338at 389.512 kb on - strandat 389.645 kb on + strandat 389.645 kb on + strandat 389.780 kb on + strand, within GFF2339at 389.780 kb on + strand, within GFF2339at 389.781 kb on - strand, within GFF2339at 389.781 kb on - strand, within GFF2339at 389.784 kb on - strand, within GFF2339at 389.798 kb on + strand, within GFF2339at 389.798 kb on + strand, within GFF2339at 389.798 kb on + strand, within GFF2339at 389.798 kb on + strand, within GFF2339at 389.799 kb on - strand, within GFF2339at 389.799 kb on - strand, within GFF2339at 389.799 kb on - strand, within GFF2339at 389.799 kb on - strand, within GFF2339at 389.847 kb on - strand, within GFF2339at 389.847 kb on - strand, within GFF2339at 389.847 kb on - strand, within GFF2339at 389.861 kb on + strand, within GFF2339at 389.964 kb on - strand, within GFF2339at 389.964 kb on - strand, within GFF2339at 389.964 kb on - strand, within GFF2339at 390.098 kb on + strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.099 kb on - strand, within GFF2339at 390.476 kb on + strand, within GFF2339at 390.477 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.762 kb on - strand, within GFF2339at 390.762 kb on - strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 391.008 kb on + strandat 391.009 kb on - strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.400 kb on + strand, within GFF2340at 391.400 kb on + strand, within GFF2340at 391.401 kb on - strand, within GFF2340at 391.482 kb on - strand, within GFF2340at 391.485 kb on - strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.547 kb on + strand, within GFF2340at 391.547 kb on + strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.562 kb on + strand, within GFF2340at 391.562 kb on + strand, within GFF2340at 391.563 kb on - strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.752 kb on - strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.779 kb on - strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.800 kb on - strand, within GFF2340at 391.800 kb on - strand, within GFF2340

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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388,554 + GFF2338 0.29 +0.1
388,554 + GFF2338 0.29 -2.6
388,554 + GFF2338 0.29 +1.5
388,554 + GFF2338 0.29 -0.3
388,555 - GFF2338 0.29 -2.9
388,730 + GFF2338 0.41 -0.8
388,730 + GFF2338 0.41 +0.3
388,730 + GFF2338 0.41 -1.6
388,731 - GFF2338 0.41 +0.2
388,731 - GFF2338 0.41 +0.2
388,731 - GFF2338 0.41 +0.1
388,731 - GFF2338 0.41 -0.4
388,944 + GFF2338 0.57 -0.1
388,944 + GFF2338 0.57 +0.1
388,944 + GFF2338 0.57 -0.2
388,945 - GFF2338 0.57 +0.2
388,945 - GFF2338 0.57 -0.3
388,945 - GFF2338 0.57 +0.4
388,945 - GFF2338 0.57 +1.5
389,176 - GFF2338 0.73 -0.3
389,352 + GFF2338 0.86 +1.1
389,352 + GFF2338 0.86 -0.5
389,353 - GFF2338 0.86 -0.6
389,512 - -0.2
389,645 + -0.2
389,645 + -1.8
389,780 + GFF2339 0.16 -0.5
389,780 + GFF2339 0.16 -1.0
389,781 - GFF2339 0.16 -0.4
389,781 - GFF2339 0.16 +0.7
389,784 - GFF2339 0.16 -1.0
389,798 + GFF2339 0.17 -0.4
389,798 + GFF2339 0.17 -0.1
389,798 + GFF2339 0.17 +0.1
389,798 + GFF2339 0.17 -1.4
389,799 - GFF2339 0.17 +0.3
389,799 - GFF2339 0.17 -1.2
389,799 - GFF2339 0.17 -0.2
389,799 - GFF2339 0.17 -0.9
389,847 - GFF2339 0.20 -0.1
389,847 - GFF2339 0.20 -0.4
389,847 - GFF2339 0.20 +0.1
389,861 + GFF2339 0.21 -2.5
389,964 - GFF2339 0.28 +0.0
389,964 - GFF2339 0.28 -1.5
389,964 - GFF2339 0.28 -1.9
390,098 + GFF2339 0.37 -0.3
390,099 - GFF2339 0.37 -0.4
390,099 - GFF2339 0.37 -0.2
390,099 - GFF2339 0.37 -0.4
390,099 - GFF2339 0.37 -0.1
390,099 - GFF2339 0.37 -0.6
390,099 - GFF2339 0.37 +0.3
390,476 + GFF2339 0.63 +0.2
390,477 - GFF2339 0.63 +0.5
390,606 - GFF2339 0.71 -0.4
390,606 - GFF2339 0.71 -0.8
390,606 - GFF2339 0.71 -0.4
390,606 - GFF2339 0.71 -0.9
390,606 - GFF2339 0.71 -0.3
390,761 + GFF2339 0.82 -0.4
390,761 + GFF2339 0.82 -0.3
390,761 + GFF2339 0.82 -1.1
390,761 + GFF2339 0.82 -0.6
390,761 + GFF2339 0.82 -0.3
390,761 + GFF2339 0.82 +0.9
390,761 + GFF2339 0.82 -0.0
390,762 - GFF2339 0.82 -0.5
390,762 - GFF2339 0.82 -1.1
390,857 + GFF2339 0.88 -0.9
390,857 + GFF2339 0.88 -0.9
390,857 + GFF2339 0.88 -1.3
390,857 + GFF2339 0.88 -1.4
390,857 + GFF2339 0.88 -0.5
390,857 + GFF2339 0.88 -2.4
390,858 - GFF2339 0.88 -0.8
390,858 - GFF2339 0.88 +0.1
390,858 - GFF2339 0.88 -0.9
390,858 - GFF2339 0.88 -0.6
390,858 - GFF2339 0.88 +0.9
390,858 - GFF2339 0.88 +0.4
390,858 - GFF2339 0.88 -0.5
390,858 - GFF2339 0.88 +0.4
391,008 + -0.9
391,009 - -1.8
391,032 + -0.3
391,032 + -0.6
391,032 + +0.6
391,032 + -0.6
391,032 + -1.6
391,032 + -0.7
391,032 + -0.7
391,032 + +0.1
391,032 + +0.1
391,032 + -2.3
391,032 + -1.0
391,033 - -1.5
391,033 - +0.1
391,033 - -1.6
391,033 - -1.4
391,033 - -0.7
391,033 - +1.0
391,033 - -1.6
391,033 - +1.7
391,033 - -0.5
391,033 - +0.5
391,033 - -1.3
391,400 + GFF2340 0.10 -1.3
391,400 + GFF2340 0.10 -0.3
391,401 - GFF2340 0.10 -0.9
391,482 - GFF2340 0.16 -0.3
391,485 - GFF2340 0.16 -1.9
391,499 + GFF2340 0.17 -0.4
391,499 + GFF2340 0.17 -0.8
391,499 + GFF2340 0.17 +0.6
391,499 + GFF2340 0.17 -1.9
391,500 - GFF2340 0.17 +0.8
391,500 - GFF2340 0.17 +0.4
391,500 - GFF2340 0.17 +0.4
391,500 - GFF2340 0.17 -1.3
391,500 - GFF2340 0.17 -1.6
391,547 + GFF2340 0.20 -0.3
391,547 + GFF2340 0.20 -0.8
391,548 - GFF2340 0.20 +1.3
391,548 - GFF2340 0.20 -1.3
391,548 - GFF2340 0.20 -0.6
391,548 - GFF2340 0.20 +1.4
391,548 - GFF2340 0.20 -0.2
391,562 + GFF2340 0.21 +0.1
391,562 + GFF2340 0.21 -0.9
391,563 - GFF2340 0.21 +0.2
391,751 + GFF2340 0.34 +0.2
391,751 + GFF2340 0.34 -0.9
391,751 + GFF2340 0.34 +0.4
391,752 - GFF2340 0.34 +0.0
391,778 + GFF2340 0.36 -0.4
391,778 + GFF2340 0.36 -0.2
391,778 + GFF2340 0.36 -2.0
391,778 + GFF2340 0.36 -0.1
391,779 - GFF2340 0.36 -0.9
391,799 + GFF2340 0.37 -0.6
391,799 + GFF2340 0.37 -0.4
391,799 + GFF2340 0.37 -0.5
391,800 - GFF2340 0.37 -1.5
391,800 - GFF2340 0.37 -0.6

Or see this region's nucleotide sequence