Strain Fitness in Variovorax sp. SCN45 around GFF2318

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2317 and GFF2318 are separated by 8 nucleotidesGFF2318 and GFF2319 are separated by 78 nucleotidesGFF2319 and GFF2320 are separated by 29 nucleotides GFF2317 - FIG015287: Zinc protease, at 369,146 to 370,531 GFF2317 GFF2318 - Transcriptional regulator ArgP, LysR family, at 370,540 to 371,454 GFF2318 GFF2319 - Arginine exporter protein ArgO, at 371,533 to 372,168 GFF2319 GFF2320 - 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171), at 372,198 to 372,845 GFF2320 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.704 kb on + strand, within GFF2317at 369.705 kb on - strand, within GFF2317at 369.719 kb on + strand, within GFF2317at 369.719 kb on + strand, within GFF2317at 369.782 kb on + strand, within GFF2317at 369.783 kb on - strand, within GFF2317at 369.783 kb on - strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.383 kb on - strand, within GFF2317at 370.383 kb on - strand, within GFF2317at 370.530 kb on - strandat 370.530 kb on - strandat 370.541 kb on + strandat 370.541 kb on + strandat 370.541 kb on + strandat 370.542 kb on - strandat 370.542 kb on - strandat 370.635 kb on - strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.469 kb on - strandat 371.504 kb on + strandat 371.505 kb on - strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.544 kb on - strandat 371.544 kb on - strandat 371.620 kb on + strand, within GFF2319at 371.620 kb on + strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.780 kb on + strand, within GFF2319at 371.780 kb on + strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 372.186 kb on + strandat 372.187 kb on - strandat 372.187 kb on - strandat 372.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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369,704 + GFF2317 0.40 -2.2
369,705 - GFF2317 0.40 -0.2
369,719 + GFF2317 0.41 +0.4
369,719 + GFF2317 0.41 +1.0
369,782 + GFF2317 0.46 -1.0
369,783 - GFF2317 0.46 -2.2
369,783 - GFF2317 0.46 +0.5
370,052 + GFF2317 0.65 -0.3
370,052 + GFF2317 0.65 -1.1
370,052 + GFF2317 0.65 -0.6
370,052 + GFF2317 0.65 +0.6
370,052 + GFF2317 0.65 -0.8
370,052 + GFF2317 0.65 -1.3
370,052 + GFF2317 0.65 -0.1
370,052 + GFF2317 0.65 -1.6
370,052 + GFF2317 0.65 +0.6
370,052 + GFF2317 0.65 -3.4
370,052 + GFF2317 0.65 -0.6
370,052 + GFF2317 0.65 -0.5
370,052 + GFF2317 0.65 -0.5
370,052 + GFF2317 0.65 -0.5
370,053 - GFF2317 0.65 -0.5
370,053 - GFF2317 0.65 -0.3
370,053 - GFF2317 0.65 -0.4
370,053 - GFF2317 0.65 -1.9
370,053 - GFF2317 0.65 -0.0
370,053 - GFF2317 0.65 -0.6
370,053 - GFF2317 0.65 -0.8
370,053 - GFF2317 0.65 -0.9
370,053 - GFF2317 0.65 -0.1
370,053 - GFF2317 0.65 -1.1
370,053 - GFF2317 0.65 -0.1
370,053 - GFF2317 0.65 +0.1
370,053 - GFF2317 0.65 -0.2
370,053 - GFF2317 0.65 -0.1
370,053 - GFF2317 0.65 +0.1
370,053 - GFF2317 0.65 +0.7
370,053 - GFF2317 0.65 -0.5
370,121 + GFF2317 0.70 -0.0
370,121 + GFF2317 0.70 +0.3
370,121 + GFF2317 0.70 -0.6
370,121 + GFF2317 0.70 -0.5
370,121 + GFF2317 0.70 -0.5
370,121 + GFF2317 0.70 -1.8
370,121 + GFF2317 0.70 -0.9
370,121 + GFF2317 0.70 -0.6
370,122 - GFF2317 0.70 -1.0
370,122 - GFF2317 0.70 +0.3
370,122 - GFF2317 0.70 -0.4
370,122 - GFF2317 0.70 -0.8
370,122 - GFF2317 0.70 -0.3
370,122 - GFF2317 0.70 +0.5
370,122 - GFF2317 0.70 -0.2
370,122 - GFF2317 0.70 +0.2
370,122 - GFF2317 0.70 -0.1
370,122 - GFF2317 0.70 +0.6
370,122 - GFF2317 0.70 +0.1
370,122 - GFF2317 0.70 +1.5
370,122 - GFF2317 0.70 -0.1
370,130 + GFF2317 0.71 -1.1
370,130 + GFF2317 0.71 -0.4
370,130 + GFF2317 0.71 -0.7
370,130 + GFF2317 0.71 -0.1
370,130 + GFF2317 0.71 -0.7
370,130 + GFF2317 0.71 -0.5
370,130 + GFF2317 0.71 +0.3
370,130 + GFF2317 0.71 -0.9
370,130 + GFF2317 0.71 -0.3
370,130 + GFF2317 0.71 +0.2
370,131 - GFF2317 0.71 -0.6
370,131 - GFF2317 0.71 -0.0
370,131 - GFF2317 0.71 -2.0
370,131 - GFF2317 0.71 -0.1
370,131 - GFF2317 0.71 -0.1
370,131 - GFF2317 0.71 +0.7
370,131 - GFF2317 0.71 -0.3
370,383 - GFF2317 0.89 -0.2
370,383 - GFF2317 0.89 -0.9
370,530 - +0.6
370,530 - -0.6
370,541 + -0.9
370,541 + -0.2
370,541 + +0.3
370,542 - -0.5
370,542 - +0.5
370,635 - GFF2318 0.10 -1.8
370,943 + GFF2318 0.44 -0.7
370,943 + GFF2318 0.44 -0.8
370,943 + GFF2318 0.44 +0.1
370,943 + GFF2318 0.44 -1.1
370,943 + GFF2318 0.44 +0.5
370,943 + GFF2318 0.44 -0.5
370,944 - GFF2318 0.44 +1.7
370,944 - GFF2318 0.44 -0.6
370,944 - GFF2318 0.44 -1.1
370,944 - GFF2318 0.44 +2.1
370,944 - GFF2318 0.44 -0.5
370,944 - GFF2318 0.44 +0.1
370,944 - GFF2318 0.44 +0.3
370,944 - GFF2318 0.44 -0.9
370,944 - GFF2318 0.44 +0.7
370,944 - GFF2318 0.44 -1.6
370,944 - GFF2318 0.44 -2.1
371,445 - -1.1
371,445 - -0.4
371,445 - -1.8
371,445 - +0.2
371,469 - -0.1
371,504 + +0.8
371,505 - +0.5
371,543 + +1.1
371,543 + -0.7
371,543 + +1.7
371,543 + -0.4
371,544 - -0.3
371,544 - +1.7
371,620 + GFF2319 0.14 -0.0
371,620 + GFF2319 0.14 -0.2
371,621 - GFF2319 0.14 -0.5
371,621 - GFF2319 0.14 -0.2
371,621 - GFF2319 0.14 -0.9
371,621 - GFF2319 0.14 -0.3
371,780 + GFF2319 0.39 -1.6
371,780 + GFF2319 0.39 +0.4
371,781 - GFF2319 0.39 -0.2
371,781 - GFF2319 0.39 +0.9
371,781 - GFF2319 0.39 -0.9
371,794 + GFF2319 0.41 +1.2
371,794 + GFF2319 0.41 +0.3
371,794 + GFF2319 0.41 -0.5
371,794 + GFF2319 0.41 -1.4
371,794 + GFF2319 0.41 +0.5
371,794 + GFF2319 0.41 +1.7
371,794 + GFF2319 0.41 +0.3
371,794 + GFF2319 0.41 +0.7
371,795 - GFF2319 0.41 +1.2
371,795 - GFF2319 0.41 -1.8
371,795 - GFF2319 0.41 +1.7
371,795 - GFF2319 0.41 -0.2
371,795 - GFF2319 0.41 -0.2
371,795 - GFF2319 0.41 -0.5
371,795 - GFF2319 0.41 -0.8
371,795 - GFF2319 0.41 +0.7
371,923 + GFF2319 0.61 +0.1
371,923 + GFF2319 0.61 -0.1
371,923 + GFF2319 0.61 +0.4
371,923 + GFF2319 0.61 -0.3
371,924 - GFF2319 0.61 +0.1
371,924 - GFF2319 0.61 +0.1
371,924 - GFF2319 0.61 -1.3
372,186 + -1.0
372,187 - -1.0
372,187 - -0.1
372,187 - -0.1

Or see this region's nucleotide sequence