Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2286 and GFF2287 overlap by 4 nucleotides GFF2287 and GFF2288 overlap by 4 nucleotides GFF2288 and GFF2289 are separated by 0 nucleotides GFF2289 and GFF2290 are separated by 111 nucleotides
GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394
GFF2286
GFF2287 - ortholog of Bordetella pertussis (BX470248) BP3300, at 342,391 to 343,353
GFF2287
GFF2288 - Glutathione-regulated potassium-efflux system protein KefC, at 343,350 to 345,206
GFF2288
GFF2289 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 345,207 to 345,914
GFF2289
GFF2290 - Chromosome partitioning protein ParA, at 346,026 to 346,646
GFF2290
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.469 kb on + strand at 342.469 kb on + strand at 342.469 kb on + strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.497 kb on - strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.689 kb on - strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.971 kb on - strand, within GFF2287 at 343.333 kb on + strand at 343.333 kb on + strand at 343.334 kb on - strand at 343.351 kb on + strand at 343.352 kb on - strand at 343.501 kb on + strand at 343.501 kb on + strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.510 kb on + strand at 343.510 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.644 kb on + strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.847 kb on - strand, within GFF2288 at 343.847 kb on - strand, within GFF2288 at 344.038 kb on + strand, within GFF2288 at 344.038 kb on + strand, within GFF2288 at 344.039 kb on - strand, within GFF2288 at 344.227 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.258 kb on - strand, within GFF2288 at 345.100 kb on + strand at 345.101 kb on - strand at 345.166 kb on + strand at 345.167 kb on - strand at 345.167 kb on - strand at 345.445 kb on + strand, within GFF2289 at 345.445 kb on + strand, within GFF2289 at 345.445 kb on + strand, within GFF2289 at 345.446 kb on - strand, within GFF2289 at 345.446 kb on - strand, within GFF2289 at 345.527 kb on - strand, within GFF2289 at 345.527 kb on - strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.551 kb on - strand, within GFF2289 at 345.551 kb on - strand, within GFF2289 at 345.625 kb on + strand, within GFF2289 at 345.626 kb on - strand, within GFF2289 at 345.683 kb on - strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.686 kb on - strand, within GFF2289 at 345.686 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.989 kb on + strand at 345.990 kb on - strand at 346.025 kb on + strand at 346.025 kb on + strand at 346.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 342,469 + -0.6 342,469 + +0.0 342,469 + -0.4 342,470 - -0.6 342,470 - +0.1 342,470 - -0.1 342,470 - -1.3 342,470 - -0.7 342,496 + GFF2287 0.11 +1.1 342,496 + GFF2287 0.11 +0.2 342,496 + GFF2287 0.11 -0.6 342,497 - GFF2287 0.11 -0.3 342,661 + GFF2287 0.28 +0.2 342,661 + GFF2287 0.28 -0.3 342,661 + GFF2287 0.28 -0.3 342,662 - GFF2287 0.28 +1.1 342,662 - GFF2287 0.28 -0.7 342,662 - GFF2287 0.28 -0.8 342,662 - GFF2287 0.28 -0.8 342,662 - GFF2287 0.28 +0.4 342,662 - GFF2287 0.28 -0.4 342,688 + GFF2287 0.31 -0.6 342,688 + GFF2287 0.31 +0.4 342,689 - GFF2287 0.31 -1.3 342,814 + GFF2287 0.44 +0.0 342,814 + GFF2287 0.44 +0.4 342,815 - GFF2287 0.44 -0.0 342,815 - GFF2287 0.44 -0.6 342,815 - GFF2287 0.44 +0.0 342,815 - GFF2287 0.44 -0.1 342,815 - GFF2287 0.44 +0.7 342,815 - GFF2287 0.44 +2.5 342,866 - GFF2287 0.49 -0.3 342,866 - GFF2287 0.49 -1.2 342,866 - GFF2287 0.49 -0.9 342,866 - GFF2287 0.49 -0.9 342,971 - GFF2287 0.60 -0.8 343,333 + +0.7 343,333 + -0.5 343,334 - -0.6 343,351 + +0.1 343,352 - +0.2 343,501 + +1.5 343,501 + +0.2 343,502 - +0.2 343,502 - +0.7 343,502 - -2.0 343,502 - -1.7 343,502 - -0.6 343,502 - +0.3 343,510 + -0.9 343,510 + +1.7 343,510 + -0.4 343,511 - +0.3 343,511 - +0.4 343,644 + GFF2288 0.16 -0.4 343,645 - GFF2288 0.16 +1.1 343,645 - GFF2288 0.16 +0.4 343,645 - GFF2288 0.16 -0.7 343,645 - GFF2288 0.16 +2.1 343,847 - GFF2288 0.27 +0.6 343,847 - GFF2288 0.27 -0.7 344,038 + GFF2288 0.37 -0.9 344,038 + GFF2288 0.37 +0.3 344,039 - GFF2288 0.37 +0.3 344,227 + GFF2288 0.47 +1.9 344,257 + GFF2288 0.49 -0.3 344,257 + GFF2288 0.49 +0.9 344,257 + GFF2288 0.49 +0.2 344,257 + GFF2288 0.49 +0.2 344,257 + GFF2288 0.49 -0.4 344,257 + GFF2288 0.49 -0.1 344,257 + GFF2288 0.49 +0.1 344,258 - GFF2288 0.49 -0.1 345,100 + -1.2 345,101 - -0.6 345,166 + -0.6 345,167 - +0.1 345,167 - -1.1 345,445 + GFF2289 0.34 -0.5 345,445 + GFF2289 0.34 -0.2 345,445 + GFF2289 0.34 -0.6 345,446 - GFF2289 0.34 -1.1 345,446 - GFF2289 0.34 -0.8 345,527 - GFF2289 0.45 -0.1 345,527 - GFF2289 0.45 -1.1 345,535 + GFF2289 0.46 -0.8 345,535 + GFF2289 0.46 -0.6 345,535 + GFF2289 0.46 +0.4 345,535 + GFF2289 0.46 +1.1 345,535 + GFF2289 0.46 -0.6 345,535 + GFF2289 0.46 +0.4 345,536 - GFF2289 0.46 -0.4 345,536 - GFF2289 0.46 -0.3 345,536 - GFF2289 0.46 -0.8 345,550 + GFF2289 0.48 -0.1 345,550 + GFF2289 0.48 +0.4 345,550 + GFF2289 0.48 +0.0 345,550 + GFF2289 0.48 -0.2 345,551 - GFF2289 0.49 +1.7 345,551 - GFF2289 0.49 -0.7 345,625 + GFF2289 0.59 +0.1 345,626 - GFF2289 0.59 -0.4 345,683 - GFF2289 0.67 +0.8 345,685 + GFF2289 0.68 +0.2 345,685 + GFF2289 0.68 -0.9 345,685 + GFF2289 0.68 -0.1 345,686 - GFF2289 0.68 +0.1 345,686 - GFF2289 0.68 -0.4 345,773 - GFF2289 0.80 +0.1 345,773 - GFF2289 0.80 -0.1 345,773 - GFF2289 0.80 -0.2 345,773 - GFF2289 0.80 +1.3 345,781 + GFF2289 0.81 -1.1 345,781 + GFF2289 0.81 +0.4 345,880 + -0.5 345,880 + +0.2 345,880 + +0.0 345,880 + -0.8 345,880 + +1.1 345,880 + +2.7 345,880 + -0.1 345,881 - -1.1 345,881 - -1.1 345,881 - +0.6 345,881 - -0.8 345,881 - +0.8 345,944 + +1.5 345,944 + -0.2 345,944 + +0.7 345,944 + +0.8 345,944 + +1.5 345,944 + -1.3 345,944 + -1.6 345,944 + +0.5 345,944 + -0.6 345,944 + -0.7 345,944 + -0.4 345,944 + +0.9 345,945 - +0.7 345,945 - -1.6 345,945 - -0.2 345,945 - -0.3 345,945 - +0.4 345,945 - -0.2 345,945 - -1.1 345,945 - +1.2 345,945 - -0.6 345,945 - -1.1 345,945 - +0.5 345,945 - -0.1 345,989 + +0.2 345,990 - -0.8 346,025 + -0.4 346,025 + +0.3 346,026 - +0.5
Or see this region's nucleotide sequence