Strain Fitness in Variovorax sp. SCN45 around GFF2005

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2003 and GFF2004 overlap by 4 nucleotidesGFF2004 and GFF2005 overlap by 4 nucleotidesGFF2005 and GFF2006 are separated by 140 nucleotides GFF2003 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 47,013 to 48,014 GFF2003 GFF2004 - no description, at 48,011 to 48,466 GFF2004 GFF2005 - Transcriptional regulator, AraC family, at 48,463 to 49,491 GFF2005 GFF2006 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 49,632 to 50,804 GFF2006 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 47.466 kb on + strand, within GFF2003at 47.466 kb on + strand, within GFF2003at 47.466 kb on + strand, within GFF2003at 47.466 kb on + strand, within GFF2003at 47.466 kb on + strand, within GFF2003at 47.466 kb on + strand, within GFF2003at 47.467 kb on - strand, within GFF2003at 47.467 kb on - strand, within GFF2003at 47.467 kb on - strand, within GFF2003at 47.467 kb on - strand, within GFF2003at 47.472 kb on + strand, within GFF2003at 47.802 kb on + strand, within GFF2003at 47.880 kb on + strand, within GFF2003at 47.881 kb on - strand, within GFF2003at 47.898 kb on + strand, within GFF2003at 47.898 kb on + strand, within GFF2003at 47.898 kb on + strand, within GFF2003at 47.898 kb on + strand, within GFF2003at 47.899 kb on - strand, within GFF2003at 47.899 kb on - strand, within GFF2003at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.293 kb on + strand, within GFF2004at 48.294 kb on - strand, within GFF2004at 48.294 kb on - strand, within GFF2004at 48.294 kb on - strand, within GFF2004at 48.341 kb on + strand, within GFF2004at 48.341 kb on + strand, within GFF2004at 48.350 kb on + strand, within GFF2004at 48.350 kb on + strand, within GFF2004at 48.351 kb on - strand, within GFF2004at 48.351 kb on - strand, within GFF2004at 48.362 kb on + strand, within GFF2004at 48.362 kb on + strand, within GFF2004at 48.362 kb on + strand, within GFF2004at 48.362 kb on + strand, within GFF2004at 48.362 kb on + strand, within GFF2004at 48.363 kb on - strand, within GFF2004at 48.363 kb on - strand, within GFF2004at 48.363 kb on - strand, within GFF2004at 48.368 kb on + strand, within GFF2004at 48.377 kb on + strand, within GFF2004at 48.378 kb on - strand, within GFF2004at 48.378 kb on - strand, within GFF2004at 48.464 kb on + strandat 48.465 kb on - strandat 48.465 kb on - strandat 48.788 kb on + strand, within GFF2005at 48.938 kb on + strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.120 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.415 kb on + strandat 49.558 kb on + strandat 49.842 kb on + strand, within GFF2006at 49.842 kb on + strand, within GFF2006at 49.905 kb on + strand, within GFF2006at 49.906 kb on - strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.086 kb on - strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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47,466 + GFF2003 0.45 +0.7
47,466 + GFF2003 0.45 +0.6
47,466 + GFF2003 0.45 +0.9
47,466 + GFF2003 0.45 +0.1
47,466 + GFF2003 0.45 -1.0
47,466 + GFF2003 0.45 -1.0
47,467 - GFF2003 0.45 +0.9
47,467 - GFF2003 0.45 -0.7
47,467 - GFF2003 0.45 -1.7
47,467 - GFF2003 0.45 -0.9
47,472 + GFF2003 0.46 +0.4
47,802 + GFF2003 0.79 +0.2
47,880 + GFF2003 0.87 -1.9
47,881 - GFF2003 0.87 +1.4
47,898 + GFF2003 0.88 +0.7
47,898 + GFF2003 0.88 +0.8
47,898 + GFF2003 0.88 -1.3
47,898 + GFF2003 0.88 +1.3
47,899 - GFF2003 0.88 -1.3
47,899 - GFF2003 0.88 +0.9
48,293 + GFF2004 0.62 -0.5
48,293 + GFF2004 0.62 +0.3
48,293 + GFF2004 0.62 +0.4
48,293 + GFF2004 0.62 +0.1
48,293 + GFF2004 0.62 -1.1
48,293 + GFF2004 0.62 +0.3
48,293 + GFF2004 0.62 -1.2
48,293 + GFF2004 0.62 +0.4
48,294 - GFF2004 0.62 +0.3
48,294 - GFF2004 0.62 -1.6
48,294 - GFF2004 0.62 -0.1
48,341 + GFF2004 0.72 -0.1
48,341 + GFF2004 0.72 +0.5
48,350 + GFF2004 0.74 -0.6
48,350 + GFF2004 0.74 +0.5
48,351 - GFF2004 0.75 -0.6
48,351 - GFF2004 0.75 -0.4
48,362 + GFF2004 0.77 -0.3
48,362 + GFF2004 0.77 +0.1
48,362 + GFF2004 0.77 -0.5
48,362 + GFF2004 0.77 -0.6
48,362 + GFF2004 0.77 -1.0
48,363 - GFF2004 0.77 -0.3
48,363 - GFF2004 0.77 +0.1
48,363 - GFF2004 0.77 -0.4
48,368 + GFF2004 0.78 -0.1
48,377 + GFF2004 0.80 -0.2
48,378 - GFF2004 0.80 -0.4
48,378 - GFF2004 0.80 -0.0
48,464 + +1.2
48,465 - -2.2
48,465 - -0.2
48,788 + GFF2005 0.32 +0.7
48,938 + GFF2005 0.46 -1.2
48,939 - GFF2005 0.46 -0.5
48,939 - GFF2005 0.46 -0.2
49,019 + GFF2005 0.54 -1.7
49,019 + GFF2005 0.54 -0.1
49,019 + GFF2005 0.54 -2.0
49,019 + GFF2005 0.54 -0.1
49,020 - GFF2005 0.54 -0.4
49,020 - GFF2005 0.54 -0.1
49,020 - GFF2005 0.54 -0.6
49,020 - GFF2005 0.54 -1.1
49,120 + GFF2005 0.64 -1.0
49,232 + GFF2005 0.75 -1.0
49,232 + GFF2005 0.75 +0.4
49,233 - GFF2005 0.75 -0.5
49,233 - GFF2005 0.75 -0.1
49,415 + +0.3
49,558 + +0.5
49,842 + GFF2006 0.18 -1.5
49,842 + GFF2006 0.18 +0.5
49,905 + GFF2006 0.23 +0.3
49,906 - GFF2006 0.23 -0.1
49,974 + GFF2006 0.29 +0.1
49,974 + GFF2006 0.29 -0.5
49,974 + GFF2006 0.29 -0.3
49,974 + GFF2006 0.29 +0.2
49,974 + GFF2006 0.29 -0.4
49,974 + GFF2006 0.29 +1.7
49,975 - GFF2006 0.29 +1.1
49,975 - GFF2006 0.29 +0.7
49,975 - GFF2006 0.29 +0.1
49,975 - GFF2006 0.29 +1.3
49,975 - GFF2006 0.29 -1.1
49,975 - GFF2006 0.29 -0.8
50,085 + GFF2006 0.39 -1.4
50,085 + GFF2006 0.39 +0.1
50,086 - GFF2006 0.39 -0.6
50,088 + GFF2006 0.39 -0.3
50,088 + GFF2006 0.39 -1.8
50,088 + GFF2006 0.39 -0.1
50,088 + GFF2006 0.39 +0.1
50,088 + GFF2006 0.39 +1.3
50,088 + GFF2006 0.39 +0.7
50,088 + GFF2006 0.39 -0.2
50,088 + GFF2006 0.39 -0.2
50,088 + GFF2006 0.39 -0.3
50,088 + GFF2006 0.39 -1.9
50,089 - GFF2006 0.39 -0.8
50,089 - GFF2006 0.39 +0.5
50,089 - GFF2006 0.39 +0.5
50,089 - GFF2006 0.39 -0.5
50,089 - GFF2006 0.39 +0.1
50,089 - GFF2006 0.39 -2.1
50,089 - GFF2006 0.39 +0.2
50,089 - GFF2006 0.39 +0.1
50,089 - GFF2006 0.39 -0.6
50,089 - GFF2006 0.39 -0.6
50,089 - GFF2006 0.39 +0.0
50,089 - GFF2006 0.39 +0.0
50,151 + GFF2006 0.44 -0.3
50,151 + GFF2006 0.44 -0.2
50,151 + GFF2006 0.44 -0.2
50,152 - GFF2006 0.44 -0.1
50,152 - GFF2006 0.44 -0.3
50,152 - GFF2006 0.44 -0.1

Or see this region's nucleotide sequence