Strain Fitness in Variovorax sp. SCN45 around GFF1958

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1958 and GFF1959 are separated by 0 nucleotides GFF1958 - MBL-fold metallo-hydrolase superfamily, at 100 to 1,032 GFF1958 GFF1959 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,033 to 2,724 GFF1959 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.052 kb on + strandat 0.101 kb on + strandat 0.101 kb on + strandat 0.101 kb on + strandat 0.101 kb on + strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.108 kb on + strandat 0.108 kb on + strandat 0.108 kb on + strandat 0.108 kb on + strandat 0.109 kb on - strandat 0.109 kb on - strandat 0.109 kb on - strandat 0.152 kb on - strandat 0.152 kb on - strandat 0.152 kb on - strandat 0.165 kb on + strandat 0.165 kb on + strandat 0.166 kb on - strandat 0.166 kb on - strandat 0.166 kb on - strandat 0.227 kb on + strand, within GFF1958at 0.227 kb on + strand, within GFF1958at 0.227 kb on + strand, within GFF1958at 0.227 kb on + strand, within GFF1958at 0.227 kb on + strand, within GFF1958at 0.227 kb on + strand, within GFF1958at 0.228 kb on - strand, within GFF1958at 0.282 kb on - strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.757 kb on + strand, within GFF1958at 0.758 kb on - strand, within GFF1958at 0.758 kb on - strand, within GFF1958at 0.758 kb on - strand, within GFF1958at 0.758 kb on - strand, within GFF1958at 0.780 kb on - strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.831 kb on + strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.832 kb on - strand, within GFF1958at 0.915 kb on + strand, within GFF1958at 0.915 kb on + strand, within GFF1958at 0.915 kb on + strand, within GFF1958at 1.130 kb on + strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.131 kb on - strandat 1.154 kb on + strandat 1.154 kb on + strandat 1.154 kb on + strandat 1.154 kb on + strandat 1.154 kb on + strandat 1.154 kb on + strandat 1.155 kb on - strandat 1.155 kb on - strandat 1.155 kb on - strandat 1.155 kb on - strandat 1.361 kb on + strand, within GFF1959at 1.361 kb on + strand, within GFF1959at 1.361 kb on + strand, within GFF1959at 1.362 kb on - strand, within GFF1959at 1.362 kb on - strand, within GFF1959at 1.362 kb on - strand, within GFF1959at 1.370 kb on - strand, within GFF1959at 1.386 kb on + strand, within GFF1959at 1.387 kb on - strand, within GFF1959at 1.387 kb on - strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.448 kb on + strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.449 kb on - strand, within GFF1959at 1.451 kb on + strand, within GFF1959at 1.452 kb on - strand, within GFF1959at 1.452 kb on - strand, within GFF1959at 1.452 kb on - strand, within GFF1959at 1.452 kb on - strand, within GFF1959at 1.469 kb on + strand, within GFF1959at 1.548 kb on + strand, within GFF1959at 1.548 kb on + strand, within GFF1959at 1.549 kb on - strand, within GFF1959at 1.549 kb on - strand, within GFF1959at 1.549 kb on - strand, within GFF1959at 1.549 kb on - strand, within GFF1959at 1.549 kb on - strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.818 kb on + strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.819 kb on - strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.922 kb on + strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 1.923 kb on - strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.020 kb on + strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959at 2.021 kb on - strand, within GFF1959

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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52 + -0.2
52 + +0.1
52 + +0.3
52 + +0.6
52 + -1.6
52 + -0.4
52 + +0.6
52 + +0.5
52 + +1.7
52 + +0.1
101 + -1.1
101 + +1.1
101 + -0.6
101 + -0.0
102 - +1.3
102 - +1.2
102 - +0.1
102 - +0.4
102 - -0.7
108 + -0.2
108 + -0.2
108 + -0.0
108 + -0.5
109 - +0.4
109 - -0.1
109 - +0.1
152 - -1.7
152 - -0.0
152 - -1.2
165 + -0.2
165 + -0.6
166 - +1.7
166 - +0.5
166 - +0.1
227 + GFF1958 0.14 +0.2
227 + GFF1958 0.14 -0.2
227 + GFF1958 0.14 +0.7
227 + GFF1958 0.14 +0.8
227 + GFF1958 0.14 +0.7
227 + GFF1958 0.14 -0.6
228 - GFF1958 0.14 -0.5
282 - GFF1958 0.20 -0.5
757 + GFF1958 0.70 +0.7
757 + GFF1958 0.70 +0.3
757 + GFF1958 0.70 +0.7
757 + GFF1958 0.70 +1.1
757 + GFF1958 0.70 +0.2
757 + GFF1958 0.70 -0.1
758 - GFF1958 0.71 +0.3
758 - GFF1958 0.71 -1.0
758 - GFF1958 0.71 +0.1
758 - GFF1958 0.71 +0.1
780 - GFF1958 0.73 -0.6
831 + GFF1958 0.78 -1.3
831 + GFF1958 0.78 -0.5
831 + GFF1958 0.78 -0.2
831 + GFF1958 0.78 +0.7
831 + GFF1958 0.78 +0.2
831 + GFF1958 0.78 +0.1
831 + GFF1958 0.78 +0.3
831 + GFF1958 0.78 -0.0
831 + GFF1958 0.78 -0.4
831 + GFF1958 0.78 -0.3
831 + GFF1958 0.78 -0.6
831 + GFF1958 0.78 +1.1
831 + GFF1958 0.78 -0.6
831 + GFF1958 0.78 +0.9
831 + GFF1958 0.78 -0.0
831 + GFF1958 0.78 +0.3
831 + GFF1958 0.78 +0.8
831 + GFF1958 0.78 -0.3
832 - GFF1958 0.78 -0.1
832 - GFF1958 0.78 +0.7
832 - GFF1958 0.78 -0.6
832 - GFF1958 0.78 -0.6
832 - GFF1958 0.78 -1.5
832 - GFF1958 0.78 -1.1
832 - GFF1958 0.78 +0.2
832 - GFF1958 0.78 -0.4
832 - GFF1958 0.78 -0.1
832 - GFF1958 0.78 -0.5
832 - GFF1958 0.78 -0.4
915 + GFF1958 0.87 -0.9
915 + GFF1958 0.87 -0.3
915 + GFF1958 0.87 -0.2
1,130 + +0.8
1,130 + -0.2
1,130 + -0.3
1,130 + +0.6
1,130 + -0.3
1,130 + +1.8
1,131 - -1.1
1,131 - -0.5
1,131 - +0.1
1,131 - -0.6
1,131 - -0.7
1,131 - +0.3
1,131 - -1.0
1,154 + +0.1
1,154 + -0.3
1,154 + +0.4
1,154 + -0.3
1,154 + +0.9
1,154 + -1.6
1,155 - -0.1
1,155 - -0.1
1,155 - +0.1
1,155 - -1.6
1,361 + GFF1959 0.19 -0.6
1,361 + GFF1959 0.19 -0.5
1,361 + GFF1959 0.19 -0.8
1,362 - GFF1959 0.19 +0.4
1,362 - GFF1959 0.19 +0.6
1,362 - GFF1959 0.19 -0.1
1,370 - GFF1959 0.20 -1.1
1,386 + GFF1959 0.21 -0.2
1,387 - GFF1959 0.21 -0.1
1,387 - GFF1959 0.21 -0.2
1,448 + GFF1959 0.25 -0.4
1,448 + GFF1959 0.25 +1.1
1,448 + GFF1959 0.25 -0.4
1,448 + GFF1959 0.25 -0.4
1,448 + GFF1959 0.25 -1.1
1,448 + GFF1959 0.25 +0.2
1,448 + GFF1959 0.25 -0.3
1,448 + GFF1959 0.25 -0.4
1,448 + GFF1959 0.25 -0.5
1,448 + GFF1959 0.25 +1.2
1,448 + GFF1959 0.25 +0.2
1,448 + GFF1959 0.25 -0.6
1,448 + GFF1959 0.25 +0.2
1,448 + GFF1959 0.25 +0.0
1,448 + GFF1959 0.25 -1.0
1,448 + GFF1959 0.25 -0.1
1,448 + GFF1959 0.25 +0.9
1,449 - GFF1959 0.25 -0.4
1,449 - GFF1959 0.25 -0.9
1,449 - GFF1959 0.25 +0.7
1,449 - GFF1959 0.25 -0.8
1,449 - GFF1959 0.25 +0.1
1,449 - GFF1959 0.25 -0.6
1,449 - GFF1959 0.25 +0.9
1,449 - GFF1959 0.25 -0.4
1,449 - GFF1959 0.25 -0.2
1,449 - GFF1959 0.25 -0.6
1,449 - GFF1959 0.25 -0.6
1,449 - GFF1959 0.25 +0.4
1,449 - GFF1959 0.25 -0.2
1,449 - GFF1959 0.25 -0.3
1,451 + GFF1959 0.25 +0.2
1,452 - GFF1959 0.25 -0.4
1,452 - GFF1959 0.25 -0.0
1,452 - GFF1959 0.25 -0.1
1,452 - GFF1959 0.25 -0.2
1,469 + GFF1959 0.26 +0.0
1,548 + GFF1959 0.30 -0.1
1,548 + GFF1959 0.30 +0.2
1,549 - GFF1959 0.30 -0.2
1,549 - GFF1959 0.30 +0.4
1,549 - GFF1959 0.30 -0.6
1,549 - GFF1959 0.30 +0.7
1,549 - GFF1959 0.30 -0.9
1,818 + GFF1959 0.46 -0.1
1,818 + GFF1959 0.46 +1.7
1,818 + GFF1959 0.46 -0.1
1,818 + GFF1959 0.46 +0.4
1,818 + GFF1959 0.46 -0.6
1,818 + GFF1959 0.46 -0.3
1,819 - GFF1959 0.46 +0.2
1,819 - GFF1959 0.46 -3.4
1,819 - GFF1959 0.46 +2.3
1,819 - GFF1959 0.46 +0.1
1,819 - GFF1959 0.46 -1.8
1,819 - GFF1959 0.46 -0.0
1,819 - GFF1959 0.46 +0.3
1,819 - GFF1959 0.46 +1.2
1,922 + GFF1959 0.53 +0.1
1,922 + GFF1959 0.53 -1.6
1,922 + GFF1959 0.53 +0.0
1,922 + GFF1959 0.53 -0.4
1,922 + GFF1959 0.53 -0.7
1,922 + GFF1959 0.53 +0.1
1,922 + GFF1959 0.53 -0.8
1,922 + GFF1959 0.53 -0.1
1,922 + GFF1959 0.53 -0.0
1,922 + GFF1959 0.53 +0.4
1,923 - GFF1959 0.53 -0.3
1,923 - GFF1959 0.53 -0.3
1,923 - GFF1959 0.53 +0.1
1,923 - GFF1959 0.53 -1.6
1,923 - GFF1959 0.53 -0.3
1,923 - GFF1959 0.53 +0.1
1,923 - GFF1959 0.53 +1.4
1,923 - GFF1959 0.53 -0.4
1,923 - GFF1959 0.53 +0.1
1,923 - GFF1959 0.53 +0.7
2,020 + GFF1959 0.58 -0.7
2,020 + GFF1959 0.58 -0.6
2,020 + GFF1959 0.58 -0.6
2,020 + GFF1959 0.58 +0.0
2,020 + GFF1959 0.58 -0.0
2,020 + GFF1959 0.58 +0.8
2,020 + GFF1959 0.58 +0.1
2,020 + GFF1959 0.58 -0.9
2,020 + GFF1959 0.58 -0.6
2,020 + GFF1959 0.58 -0.8
2,020 + GFF1959 0.58 +0.3
2,020 + GFF1959 0.58 +0.4
2,020 + GFF1959 0.58 -0.4
2,020 + GFF1959 0.58 +1.1
2,020 + GFF1959 0.58 -0.1
2,020 + GFF1959 0.58 -0.5
2,020 + GFF1959 0.58 -3.0
2,020 + GFF1959 0.58 +0.1
2,021 - GFF1959 0.58 -0.6
2,021 - GFF1959 0.58 -0.6
2,021 - GFF1959 0.58 -0.8
2,021 - GFF1959 0.58 -0.1
2,021 - GFF1959 0.58 -0.2
2,021 - GFF1959 0.58 +0.3
2,021 - GFF1959 0.58 +0.7
2,021 - GFF1959 0.58 +0.1
2,021 - GFF1959 0.58 -0.5
2,021 - GFF1959 0.58 +0.1
2,021 - GFF1959 0.58 +0.5
2,021 - GFF1959 0.58 -0.3
2,021 - GFF1959 0.58 -0.1
2,021 - GFF1959 0.58 -0.5
2,021 - GFF1959 0.58 -0.2

Or see this region's nucleotide sequence