Strain Fitness in Variovorax sp. SCN45 around GFF1453

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1452 and GFF1453 are separated by 6 nucleotidesGFF1453 and GFF1454 are separated by 200 nucleotides GFF1452 - Predicted gluconate TRAP family transporter, DctM subunit, at 43,903 to 45,792 GFF1452 GFF1453 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 45,799 to 46,818 GFF1453 GFF1454 - Transcriptional regulator, LacI/PurR family, at 47,019 to 48,029 GFF1454 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 44.870 kb on + strand, within GFF1452at 44.871 kb on - strand, within GFF1452at 44.891 kb on + strand, within GFF1452at 44.891 kb on + strand, within GFF1452at 44.891 kb on + strand, within GFF1452at 45.598 kb on + strand, within GFF1452at 45.598 kb on + strand, within GFF1452at 45.599 kb on - strand, within GFF1452at 45.599 kb on - strand, within GFF1452at 45.599 kb on - strand, within GFF1452at 45.620 kb on + strandat 45.872 kb on + strandat 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.382 kb on + strand, within GFF1453at 46.382 kb on + strand, within GFF1453at 46.383 kb on - strand, within GFF1453at 46.383 kb on - strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.712 kb on + strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.953 kb on - strandat 46.962 kb on - strandat 47.142 kb on + strand, within GFF1454at 47.143 kb on - strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.164 kb on - strand, within GFF1454at 47.164 kb on - strand, within GFF1454at 47.257 kb on - strand, within GFF1454at 47.532 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.599 kb on - strand, within GFF1454at 47.599 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
44,870 + GFF1452 0.51 +0.1
44,871 - GFF1452 0.51 -0.3
44,891 + GFF1452 0.52 +0.3
44,891 + GFF1452 0.52 -1.7
44,891 + GFF1452 0.52 -0.9
45,598 + GFF1452 0.90 -0.1
45,598 + GFF1452 0.90 -1.3
45,599 - GFF1452 0.90 -1.2
45,599 - GFF1452 0.90 -1.9
45,599 - GFF1452 0.90 -0.9
45,620 + -0.7
45,872 + -0.9
46,205 + GFF1453 0.40 +0.3
46,205 + GFF1453 0.40 -0.1
46,205 + GFF1453 0.40 +0.2
46,205 + GFF1453 0.40 +0.3
46,206 - GFF1453 0.40 +0.2
46,206 - GFF1453 0.40 +0.7
46,206 - GFF1453 0.40 -0.9
46,382 + GFF1453 0.57 +1.7
46,382 + GFF1453 0.57 +0.3
46,383 - GFF1453 0.57 +1.7
46,383 - GFF1453 0.57 +0.8
46,457 + GFF1453 0.65 +1.7
46,457 + GFF1453 0.65 -0.3
46,457 + GFF1453 0.65 -0.5
46,458 - GFF1453 0.65 -0.3
46,458 - GFF1453 0.65 +0.7
46,458 - GFF1453 0.65 -0.4
46,458 - GFF1453 0.65 +0.9
46,458 - GFF1453 0.65 -0.9
46,706 + GFF1453 0.89 -0.9
46,706 + GFF1453 0.89 -1.0
46,706 + GFF1453 0.89 +0.3
46,707 - GFF1453 0.89 -1.0
46,707 - GFF1453 0.89 +0.2
46,707 - GFF1453 0.89 -0.2
46,707 - GFF1453 0.89 +0.7
46,712 + GFF1453 0.90 -1.7
46,713 - GFF1453 0.90 -0.3
46,713 - GFF1453 0.90 +1.1
46,713 - GFF1453 0.90 -0.3
46,953 - -0.0
46,962 - -1.7
47,142 + GFF1454 0.12 +0.5
47,143 - GFF1454 0.12 +0.4
47,163 + GFF1454 0.14 -0.1
47,163 + GFF1454 0.14 -0.3
47,163 + GFF1454 0.14 +0.1
47,163 + GFF1454 0.14 -0.1
47,164 - GFF1454 0.14 +0.4
47,164 - GFF1454 0.14 -1.2
47,257 - GFF1454 0.24 +0.2
47,532 + GFF1454 0.51 +0.2
47,598 + GFF1454 0.57 -0.8
47,598 + GFF1454 0.57 -0.1
47,598 + GFF1454 0.57 +0.6
47,598 + GFF1454 0.57 -0.2
47,598 + GFF1454 0.57 -1.5
47,598 + GFF1454 0.57 -1.0
47,599 - GFF1454 0.57 +0.3
47,599 - GFF1454 0.57 +0.2
47,710 - GFF1454 0.68 -1.9
47,710 - GFF1454 0.68 +0.0
47,710 - GFF1454 0.68 -0.1
47,760 + GFF1454 0.73 -0.7
47,760 + GFF1454 0.73 -1.5
47,760 + GFF1454 0.73 -0.3
47,760 + GFF1454 0.73 -0.2
47,760 + GFF1454 0.73 +1.7
47,760 + GFF1454 0.73 -0.5
47,761 - GFF1454 0.73 -0.5
47,761 - GFF1454 0.73 +0.0
47,761 - GFF1454 0.73 -0.8
47,761 - GFF1454 0.73 -0.3
47,761 - GFF1454 0.73 +0.5
47,761 - GFF1454 0.73 -0.4
47,761 - GFF1454 0.73 -0.2

Or see this region's nucleotide sequence