Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF134 and GFF135 are separated by 142 nucleotides GFF135 and GFF136 are separated by 10 nucleotides
GFF134 - putative oxidoreductase (AsfA-like), putative L-aspartate oxidase( EC:1.4.3.16 ), at 161,821 to 163,443
GFF134
GFF135 - no description, at 163,586 to 164,020
GFF135
GFF136 - Uncharacterized MFS-type transporter, at 164,031 to 165,458
GFF136
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.680 kb on + strand, within GFF134 at 162.681 kb on - strand, within GFF134 at 163.031 kb on + strand, within GFF134 at 163.032 kb on - strand, within GFF134 at 163.032 kb on - strand, within GFF134 at 163.479 kb on + strand at 163.480 kb on - strand at 163.524 kb on + strand at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.698 kb on - strand, within GFF135 at 163.698 kb on - strand, within GFF135 at 163.754 kb on + strand, within GFF135 at 163.754 kb on + strand, within GFF135 at 163.755 kb on - strand, within GFF135 at 163.755 kb on - strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.934 kb on + strand, within GFF135 at 163.943 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.977 kb on - strand at 164.032 kb on + strand at 164.032 kb on + strand at 164.033 kb on - strand at 164.659 kb on + strand, within GFF136 at 164.659 kb on + strand, within GFF136 at 164.659 kb on + strand, within GFF136 at 164.659 kb on + strand, within GFF136 at 164.659 kb on + strand, within GFF136 at 164.659 kb on - strand, within GFF136 at 164.660 kb on - strand, within GFF136 at 164.660 kb on - strand, within GFF136 at 164.660 kb on - strand, within GFF136 at 164.965 kb on + strand, within GFF136 at 164.966 kb on - strand, within GFF136
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 162,680 + GFF134 0.53 +0.1 162,681 - GFF134 0.53 +0.7 163,031 + GFF134 0.75 -0.4 163,032 - GFF134 0.75 -0.4 163,032 - GFF134 0.75 +0.5 163,479 + +0.2 163,480 - -0.3 163,524 + +0.2 163,697 + GFF135 0.26 -0.3 163,697 + GFF135 0.26 +0.8 163,697 + GFF135 0.26 +0.5 163,697 + GFF135 0.26 -0.8 163,697 + GFF135 0.26 -0.2 163,697 + GFF135 0.26 +1.2 163,697 + GFF135 0.26 +0.7 163,698 - GFF135 0.26 -0.8 163,698 - GFF135 0.26 +0.1 163,754 + GFF135 0.39 +0.1 163,754 + GFF135 0.39 +1.6 163,755 - GFF135 0.39 -0.8 163,755 - GFF135 0.39 +0.7 163,919 + GFF135 0.77 -0.5 163,919 + GFF135 0.77 -0.6 163,919 + GFF135 0.77 +0.6 163,934 + GFF135 0.80 +1.8 163,943 + GFF135 0.82 +0.1 163,976 + GFF135 0.90 +0.1 163,976 + GFF135 0.90 -0.6 163,976 + GFF135 0.90 +0.0 163,977 - -0.8 164,032 + +0.2 164,032 + -2.3 164,033 - -0.7 164,659 + GFF136 0.44 +1.4 164,659 + GFF136 0.44 -0.6 164,659 + GFF136 0.44 -0.1 164,659 + GFF136 0.44 -0.8 164,659 + GFF136 0.44 +0.1 164,659 - GFF136 0.44 -0.6 164,660 - GFF136 0.44 -0.6 164,660 - GFF136 0.44 -0.7 164,660 - GFF136 0.44 -0.2 164,965 + GFF136 0.65 -0.3 164,966 - GFF136 0.65 -0.8
Or see this region's nucleotide sequence