Strain Fitness in Variovorax sp. SCN45 around GFF1340

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1339 and GFF1340 overlap by 4 nucleotidesGFF1340 and GFF1341 are separated by 1 nucleotidesGFF1341 and GFF1342 are separated by 150 nucleotides GFF1339 - ABC transporter, permease protein 2 RSc1752, at 680,907 to 682,235 GFF1339 GFF1340 - ABC transporter, ATP-binding protein 1 RSc1753, at 682,232 to 683,002 GFF1340 GFF1341 - ABC transporter, ATP-binding protein 2 RSc1754, at 683,004 to 683,699 GFF1341 GFF1342 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 683,850 to 685,955 GFF1342 Position (kb) 682 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.483 kb on + strand, within GFF1339at 681.723 kb on + strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.841 kb on - strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.949 kb on - strand, within GFF1339at 681.949 kb on - strand, within GFF1339at 681.957 kb on + strand, within GFF1339at 681.957 kb on + strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.238 kb on + strandat 682.238 kb on + strandat 682.238 kb on + strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.451 kb on + strand, within GFF1340at 682.559 kb on + strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.680 kb on - strand, within GFF1340at 682.892 kb on + strand, within GFF1340at 682.958 kb on + strandat 682.958 kb on + strandat 682.959 kb on - strandat 682.959 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.035 kb on - strandat 683.211 kb on + strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.520 kb on + strand, within GFF1341at 683.521 kb on - strand, within GFF1341at 683.701 kb on - strandat 683.743 kb on + strandat 683.744 kb on - strandat 683.744 kb on - strandat 683.784 kb on - strandat 683.862 kb on + strandat 683.862 kb on + strandat 683.863 kb on - strandat 683.863 kb on - strandat 683.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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681,465 + GFF1339 0.42 -0.5
681,465 + GFF1339 0.42 +0.0
681,465 + GFF1339 0.42 +0.2
681,465 + GFF1339 0.42 -1.2
681,466 - GFF1339 0.42 -0.4
681,466 - GFF1339 0.42 -0.0
681,466 - GFF1339 0.42 -0.1
681,466 - GFF1339 0.42 +0.4
681,466 - GFF1339 0.42 +0.9
681,466 - GFF1339 0.42 -1.1
681,466 - GFF1339 0.42 -0.3
681,466 - GFF1339 0.42 -0.2
681,468 + GFF1339 0.42 -0.5
681,468 + GFF1339 0.42 -0.6
681,468 + GFF1339 0.42 -0.6
681,469 - GFF1339 0.42 -0.6
681,469 - GFF1339 0.42 -1.2
681,469 - GFF1339 0.42 +0.5
681,483 + GFF1339 0.43 -1.9
681,723 + GFF1339 0.61 -0.7
681,724 - GFF1339 0.61 -0.1
681,724 - GFF1339 0.61 +1.4
681,724 - GFF1339 0.61 +0.4
681,840 + GFF1339 0.70 -2.0
681,840 + GFF1339 0.70 -0.3
681,841 - GFF1339 0.70 -2.2
681,948 + GFF1339 0.78 -0.5
681,948 + GFF1339 0.78 -1.9
681,948 + GFF1339 0.78 +0.1
681,948 + GFF1339 0.78 -1.1
681,949 - GFF1339 0.78 -1.0
681,949 - GFF1339 0.78 -0.2
681,957 + GFF1339 0.79 +0.2
681,957 + GFF1339 0.79 -0.3
681,958 - GFF1339 0.79 -1.0
681,958 - GFF1339 0.79 -1.0
681,958 - GFF1339 0.79 -1.3
681,958 - GFF1339 0.79 +0.1
682,023 + GFF1339 0.84 +0.7
682,023 + GFF1339 0.84 +0.4
682,023 + GFF1339 0.84 -0.3
682,023 + GFF1339 0.84 +0.0
682,023 + GFF1339 0.84 +0.2
682,024 - GFF1339 0.84 -1.0
682,024 - GFF1339 0.84 -0.5
682,024 - GFF1339 0.84 +0.6
682,024 - GFF1339 0.84 -0.6
682,024 - GFF1339 0.84 -1.0
682,024 - GFF1339 0.84 +0.2
682,024 - GFF1339 0.84 -0.5
682,024 - GFF1339 0.84 -2.6
682,024 - GFF1339 0.84 -0.4
682,024 - GFF1339 0.84 +0.1
682,024 - GFF1339 0.84 -0.8
682,238 + -0.5
682,238 + +0.1
682,238 + -0.5
682,239 - -0.4
682,239 - +0.3
682,239 - -0.9
682,451 + GFF1340 0.28 -1.6
682,559 + GFF1340 0.42 -1.0
682,560 - GFF1340 0.43 +1.3
682,560 - GFF1340 0.43 -0.6
682,565 + GFF1340 0.43 -0.1
682,565 + GFF1340 0.43 -1.1
682,565 + GFF1340 0.43 -0.4
682,566 - GFF1340 0.43 +0.5
682,566 - GFF1340 0.43 +0.9
682,566 - GFF1340 0.43 -0.4
682,566 - GFF1340 0.43 -0.2
682,566 - GFF1340 0.43 -1.0
682,679 + GFF1340 0.58 +0.3
682,679 + GFF1340 0.58 -0.9
682,679 + GFF1340 0.58 -1.3
682,679 + GFF1340 0.58 -0.8
682,679 + GFF1340 0.58 -0.2
682,679 + GFF1340 0.58 +0.4
682,680 - GFF1340 0.58 -0.5
682,892 + GFF1340 0.86 -0.7
682,958 + +0.1
682,958 + -0.4
682,959 - -0.6
682,959 - -0.4
683,031 + -0.5
683,032 - -0.2
683,035 - -0.1
683,211 + GFF1341 0.30 -0.5
683,212 - GFF1341 0.30 +0.3
683,212 - GFF1341 0.30 +0.4
683,239 - GFF1341 0.34 +0.7
683,239 - GFF1341 0.34 +0.7
683,346 + GFF1341 0.49 -1.9
683,346 + GFF1341 0.49 -1.6
683,346 + GFF1341 0.49 -0.9
683,346 + GFF1341 0.49 +0.1
683,346 + GFF1341 0.49 -1.3
683,346 + GFF1341 0.49 -0.7
683,346 + GFF1341 0.49 -2.0
683,346 + GFF1341 0.49 +1.3
683,346 + GFF1341 0.49 +0.3
683,346 + GFF1341 0.49 -0.4
683,346 + GFF1341 0.49 +0.4
683,346 + GFF1341 0.49 -1.4
683,347 - GFF1341 0.49 -1.0
683,347 - GFF1341 0.49 -0.1
683,347 - GFF1341 0.49 -0.1
683,347 - GFF1341 0.49 -1.0
683,347 - GFF1341 0.49 -0.6
683,347 - GFF1341 0.49 +0.1
683,347 - GFF1341 0.49 -2.4
683,347 - GFF1341 0.49 -1.1
683,347 - GFF1341 0.49 -0.3
683,520 + GFF1341 0.74 +0.5
683,521 - GFF1341 0.74 +0.0
683,701 - -1.5
683,743 + -1.2
683,744 - +0.1
683,744 - -0.9
683,784 - +2.5
683,862 + +0.1
683,862 + +0.6
683,863 - -1.3
683,863 - +0.3
683,863 - +0.3

Or see this region's nucleotide sequence