Strain Fitness in Variovorax sp. SCN45 around GFF1329

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1326 and GFF1327 are separated by 139 nucleotidesGFF1327 and GFF1328 overlap by 4 nucleotidesGFF1328 and GFF1329 are separated by 10 nucleotidesGFF1329 and GFF1330 overlap by 4 nucleotides GFF1326 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8), at 666,570 to 667,355 GFF1326 GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 GFF1328 - Intracellular septation protein IspA, at 667,785 to 668,327 GFF1328 GFF1329 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 668,338 to 668,754 GFF1329 GFF1330 - UPF0061 protein YdiU, at 668,751 to 670,232 GFF1330 Position (kb) 668 669Strain fitness (log2 ratio) -2 -1 0 1 2at 667.364 kb on + strandat 667.365 kb on - strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.392 kb on - strandat 667.392 kb on - strandat 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.767 kb on + strandat 667.768 kb on - strandat 667.773 kb on + strandat 667.774 kb on - strandat 667.774 kb on - strandat 667.812 kb on - strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.740 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.807 kb on - strandat 668.807 kb on - strandat 668.831 kb on - strandat 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.109 kb on + strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.320 kb on - strand, within GFF1330at 669.349 kb on + strand, within GFF1330at 669.350 kb on - strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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667,364 + -0.7
667,365 - -1.5
667,391 + -0.8
667,391 + +1.3
667,391 + -0.2
667,391 + -0.6
667,391 + +0.3
667,392 - -0.6
667,392 - -0.5
667,556 + GFF1327 0.21 -1.2
667,556 + GFF1327 0.21 -0.3
667,556 + GFF1327 0.21 -0.3
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 +0.6
667,556 + GFF1327 0.21 -0.7
667,556 + GFF1327 0.21 -0.1
667,556 + GFF1327 0.21 -0.2
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 -0.2
667,556 + GFF1327 0.21 +0.7
667,556 + GFF1327 0.21 +0.2
667,556 + GFF1327 0.21 +1.6
667,556 + GFF1327 0.21 +1.1
667,556 + GFF1327 0.21 +0.2
667,556 + GFF1327 0.21 -1.5
667,556 + GFF1327 0.21 -0.6
667,556 + GFF1327 0.21 -1.3
667,557 - GFF1327 0.21 -0.3
667,557 - GFF1327 0.21 -0.2
667,557 - GFF1327 0.21 -0.3
667,557 - GFF1327 0.21 -2.7
667,557 - GFF1327 0.21 +0.1
667,557 - GFF1327 0.21 +0.4
667,557 - GFF1327 0.21 +1.3
667,557 - GFF1327 0.21 -0.2
667,557 - GFF1327 0.21 -0.3
667,557 - GFF1327 0.21 +0.0
667,557 - GFF1327 0.21 +0.3
667,557 - GFF1327 0.21 +0.1
667,557 - GFF1327 0.21 +0.5
667,557 - GFF1327 0.21 -0.4
667,557 - GFF1327 0.21 -0.8
667,767 + -0.5
667,768 - +0.1
667,773 + +0.1
667,774 - -0.5
667,774 - -0.1
667,812 - +0.1
667,828 + -1.4
667,828 + -1.2
667,828 + +0.9
667,828 + -0.5
667,828 + -0.7
667,828 + +0.9
667,828 + -0.5
667,828 + +1.2
667,829 - +1.1
667,829 - +1.8
667,829 - +0.0
667,829 - -1.9
667,829 - -0.1
667,829 - -0.2
667,829 - -0.8
667,829 - +1.7
667,829 - -0.9
667,829 - -0.5
667,829 - -0.5
667,829 - +0.7
668,384 + GFF1329 0.11 +1.0
668,384 + GFF1329 0.11 -2.0
668,384 + GFF1329 0.11 -0.5
668,385 - GFF1329 0.11 +0.3
668,385 - GFF1329 0.11 -0.4
668,385 - GFF1329 0.11 -0.4
668,385 - GFF1329 0.11 -0.8
668,385 - GFF1329 0.11 +0.1
668,385 - GFF1329 0.11 -0.3
668,603 + GFF1329 0.64 +0.4
668,603 + GFF1329 0.64 +0.3
668,603 + GFF1329 0.64 -0.3
668,603 + GFF1329 0.64 -1.4
668,603 + GFF1329 0.64 -1.3
668,603 + GFF1329 0.64 -0.0
668,604 - GFF1329 0.64 +0.6
668,604 - GFF1329 0.64 -1.0
668,604 - GFF1329 0.64 +0.3
668,604 - GFF1329 0.64 -1.3
668,604 - GFF1329 0.64 -1.3
668,604 - GFF1329 0.64 -0.0
668,604 - GFF1329 0.64 -0.6
668,604 - GFF1329 0.64 -0.1
668,604 - GFF1329 0.64 -0.6
668,630 + GFF1329 0.70 +0.3
668,630 + GFF1329 0.70 +0.0
668,630 + GFF1329 0.70 -0.2
668,630 + GFF1329 0.70 -1.4
668,630 + GFF1329 0.70 -1.2
668,631 - GFF1329 0.70 -0.6
668,631 - GFF1329 0.70 -0.0
668,631 - GFF1329 0.70 +0.7
668,740 + +0.9
668,806 + +0.8
668,806 + +0.8
668,806 + -1.1
668,806 + -1.5
668,806 + +1.0
668,806 + -0.6
668,806 + +0.5
668,807 - -0.9
668,807 - -1.9
668,831 - -1.0
669,079 + GFF1330 0.22 -0.2
669,079 + GFF1330 0.22 -0.7
669,079 + GFF1330 0.22 -1.5
669,079 + GFF1330 0.22 +0.2
669,079 + GFF1330 0.22 -0.6
669,079 + GFF1330 0.22 -0.7
669,079 + GFF1330 0.22 -1.0
669,079 + GFF1330 0.22 +0.2
669,080 - GFF1330 0.22 -0.8
669,080 - GFF1330 0.22 -0.2
669,080 - GFF1330 0.22 -0.7
669,080 - GFF1330 0.22 +0.7
669,080 - GFF1330 0.22 -0.0
669,080 - GFF1330 0.22 -0.3
669,109 + GFF1330 0.24 -1.2
669,110 - GFF1330 0.24 +0.1
669,110 - GFF1330 0.24 -0.1
669,110 - GFF1330 0.24 -0.2
669,238 + GFF1330 0.33 +0.2
669,238 + GFF1330 0.33 +0.3
669,238 + GFF1330 0.33 -0.0
669,239 - GFF1330 0.33 -0.1
669,239 - GFF1330 0.33 -0.3
669,239 - GFF1330 0.33 -0.1
669,239 - GFF1330 0.33 +0.1
669,239 - GFF1330 0.33 -1.3
669,239 - GFF1330 0.33 -1.1
669,262 - GFF1330 0.34 +0.2
669,262 - GFF1330 0.34 +0.6
669,262 - GFF1330 0.34 -1.4
669,319 + GFF1330 0.38 -0.7
669,319 + GFF1330 0.38 -0.4
669,320 - GFF1330 0.38 +0.4
669,349 + GFF1330 0.40 -0.6
669,350 - GFF1330 0.40 -1.3
669,547 + GFF1330 0.54 -1.3
669,547 + GFF1330 0.54 -0.5
669,547 + GFF1330 0.54 +1.1
669,607 + GFF1330 0.58 -0.1
669,607 + GFF1330 0.58 +0.2
669,607 + GFF1330 0.58 -0.5
669,607 + GFF1330 0.58 +0.0
669,607 + GFF1330 0.58 +0.3
669,607 + GFF1330 0.58 +0.1
669,607 + GFF1330 0.58 -0.4
669,607 + GFF1330 0.58 +0.4
669,608 - GFF1330 0.58 +0.7
669,608 - GFF1330 0.58 +0.6
669,608 - GFF1330 0.58 +0.8
669,608 - GFF1330 0.58 +1.6
669,608 - GFF1330 0.58 -0.6
669,608 - GFF1330 0.58 -0.6
669,608 - GFF1330 0.58 -0.3

Or see this region's nucleotide sequence